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Summary[edit source | edit]

  • pan ID?: SAUPAN003618000
  • symbol?: miaA
  • description?: tRNA delta(2)-isopentenylpyrophosphate transferase

      descriptions from strain specific annotations:

    • tRNA delta(2)-isopentenylpyrophosphate transferase
    • tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA
    • putative tRNA delta 2-isopentenylpyrophosphatetransferase
    • tRNA dimethylallyltransferase
  • strand?: +
  • coordinates?: 3956874..3957821
  • synteny block?: BlockID0026890
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1323 (miaA)
    N315:
    SA1144 (miaA)
    NCTC8325:
    Newman:
    NWMN_1211 (miaA)
    USA300_FPR3757:
    04-02981:
    SA2981_1260 (miaA)
    08BA02176:
    C248_1337 (miaA)
    11819-97:
    MS7_1260 (miaA)
    71193:
    ST398NM01_1305
    ECT-R 2:
    ECTR2_1160 (miaA)
    ED133:
    SAOV_1304
    ED98:
    SAAV_1277 (miaA)
    HO 5096 0412:
    SAEMRSA15_11370 (miaA)
    JH1:
    SaurJH1_1388 (miaA)
    JH9:
    SaurJH9_1362 (miaA)
    JKD6008:
    SAA6008_01257 (miaA)
    JKD6159:
    SAA6159_01157 (miaA)
    LGA251:
    SARLGA251_12130 (miaA)
    M013:
    M013TW_1244
    MRSA252:
    SAR1278 (miaA)
    MSHR1132:
    SAMSHR1132_11450
    MSSA476:
    SAS1236 (miaA)
    Mu3:
    SAHV_1293 (miaA)
    Mu50:
    SAV1304 (miaA)
    MW2:
    MW1186 (miaA)
    RF122:
    SAB1164 (miaA)
    ST398:
    SAPIG1305 (miaA)
    T0131:
    SAT0131_01359
    TCH60:
    HMPREF0772_11923 (miaA)
    TW20:
    SATW20_12960 (miaA)
    USA300_TCH1516:
    USA300HOU_1234 (miaA)
    VC40:
    SAVC_05710 (miaA)

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MNKNKPFIVVIVGPTASGKTELSIELAKRINGEIISGDSMQVYKHMNIGTAKVTPEEMDG
    N315            MNKNKPFIVVIVGPTASGKTELSIELAKRINGEIISGDSMQVYKHMNIGTAKVTPEEMDG
    NCTC8325        MNKNKPFIVVIVGPTASGKTELSIELAKRINGEIISGDSMQVYKHMNIGTAKVTPEEMDG
    Newman          MNKNKPFIVVIVGPTASGKTELSIELAKRINGEIISGDSMQVYKHMNIGTAKVTPEEMDG
    USA300_FPR3757  MNKNKPFIVVIVGPTASGKTELSIELAKRINGEIISGDSMQVYKHMNIGTAKVTPEEMDG
                    ************************************************************

    COL             IPHHLIDILNPDDTFSAYEFKRLAEDLITDITNRGKVPIIAGGTGLYIQSLIYNYELEDE
    N315            IPHHLIDILNPDDTFSAYEFKRLAEDLITDITNRGKVPIIAGGTGLYIQSLIYNYELEDE
    NCTC8325        IPHHLIDILNPDDTFSAYEFKRLAEDLITDITNRGKVPIIAGGTGLYIQSLIYNYELEDE
    Newman          IPHHLIDILNPDDTFSAYEFKRLAEDLITDITNRGKVPIIAGGTGLYIQSLIYNYELEDE
    USA300_FPR3757  IPHHLIDILNPDDTFSAYEFKRLAEDLITDITNRGKVPIIAGGTGLYIQSLIYNYELEDE
                    ************************************************************

    COL             TVTPAQLSIVKQKLSALEHLDNQQLHDYLAQFDAVSAENIHPNNRQRVLRAIEYYLKTKK
    N315            TVTPAQLSIVKQKLSALEHLDNQQLHDYLAQFDAVSAENIHPNNRQRVLRAIEYYLKTKK
    NCTC8325        TVTPAQLSIVKQKLSALEHLDNQQLHDYLAQFDAVSAENIHPNNRQRVLRAIEYYLKTKK
    Newman          TVTPAQLSIVKQKLSALEHLDNQQLHDYLAQFDAVSAENIHPNNRQRVLRAIEYYLKTKK
    USA300_FPR3757  TVTPAQLSIVKQKLSALEHLDNQQLHDYLAQFDAVSAENIHPNNRQRVLRAIEYYLKTKK
                    ************************************************************

    COL             LLSNRKKVQQFTENYDTLLLGIEMSRKTLYSRINKRVDIMLDHGLFREVQQLVEQGYESC
    N315            LLSNRKKVQQFTENYDTLLLGIEMSRKTLYSRINKRVDIMLDHGLFREVQQLVEQGYESC
    NCTC8325        LLSNRKKVQQFTENYDTLLLGIEMSRKTLYSRINKRVDIMLDHGLFREVQQLVEQGYESC
    Newman          LLSNRKKVQQFTENYDTLLLGIEMSRKTLYSRINKRVDIMLDHGLFREVQQLVEQGYESC
    USA300_FPR3757  LLSNRKKVQQFTENYDTLLLGIEMSRKTLYSRINKRVDIMLDHGLFREVQQLVEQGYESC
                    ************************************************************

    COL             QSMQAIGYKELIPVINGQMIYEDAVNDLKQHSRQYAKRQMTWFKNKMSVHWLDKENMSLQ
    N315            QSMQAIGYKELIPVINGQMIYEDAVNDLKQHSRQYAKRQMTWFKNKMSVHWLDKENMSLQ
    NCTC8325        QSMQAIGYKELIPVINGQMIYEDAVNDLKQHSRQYAKRQMTWFKNKMSVHWLDKENMSLQ
    Newman          QSMQAIGYKELIPVINGQMIYEDAVNDLKQHSRQYAKRQMTWFKNKMSVHWLDKENMSLQ
    USA300_FPR3757  QSMQAIGYKELIPVINGQMIYEDAVNDLKQHSRQYAKRQMTWFKNKMSVHWLDKENMSLQ
                    ************************************************************

    COL             MMLDEITTQIK
    N315            MMLDEITTQIK
    NCTC8325        MMLDEITTQIK
    Newman          MMLDEITTQIK
    USA300_FPR3757  MMLDEITTQIK
                    ***********