From AureoWiki
Jump to: navigation, search

Summary[edit source | edit]

  • pan ID?: SAUPAN003808000
  • symbol?: dapA
  • description?: 4-hydroxy-tetrahydrodipicolinate synthase

      descriptions from strain specific annotations:

    • 4-hydroxy-tetrahydrodipicolinate synthase
    • dihydrodipicolinate synthase
  • strand?: +
  • coordinates?: 4099441..4100328
  • synteny block?: BlockID0028650
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1430 (dapA)
    N315:
    SA1227 (dapA)
    NCTC8325:
    Newman:
    NWMN_1306 (dapA)
    USA300_FPR3757:
    04-02981:
    SA2981_1349 (dapA)
    08BA02176:
    C248_1434 (dapA)
    11819-97:
    MS7_1351 (dapA)
    71193:
    ST398NM01_1396
    ECT-R 2:
    ECTR2_1252 (dapA)
    ED133:
    SAOV_1404 (dapA)
    ED98:
    SAAV_1378 (dapA)
    HO 5096 0412:
    SAEMRSA15_12580 (dapA)
    JH1:
    SaurJH1_1485
    JH9:
    SaurJH9_1456
    JKD6008:
    SAA6008_01359 (dapA)
    JKD6159:
    SAA6159_01261 (dapA)
    LGA251:
    SARLGA251_13110 (dapA)
    M013:
    M013TW_1339
    MRSA252:
    SAR1407 (dapA)
    MSHR1132:
    SAMSHR1132_12360
    MSSA476:
    SAS1336 (dapA)
    Mu3:
    SAHV_1383 (dapA)
    Mu50:
    SAV1395 (dapA)
    MW2:
    MW1283 (dapA)
    RF122:
    SAB1250 (dapA)
    ST398:
    SAPIG1396 (dapA)
    T0131:
    SAT0131_01469
    TCH60:
    HMPREF0772_11814 (dapA)
    TW20:
    SATW20_13940 (dapA)
    USA300_TCH1516:
    USA300HOU_1330 (dapA)
    VC40:
    SAVC_06220

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MTHLFEGVGVALTTPFTNNKVNIEALKTHVNFLLENNAQAIIVNGTTAESPTLTTDEKER
    N315            MTHLFEGVGVALTTPFTNNKVNLEALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKER
    NCTC8325        MTHLFEGVGVALTTPFTNNKVNIEALKTHVNFLLENNAQAIIVNGTTAESPTLTTDEKER
    Newman          MTHLFEGVGVALTTPFTNNKVNIEALKTHVNFLLENNAQAIIVNGTTAESPTLTTDEKER
    USA300_FPR3757  MTHLFEGVGVALTTPFTNNKVNIEALKTHVNFLLENNAQAIIVNGTTAESPTLTTDEKER
                    **********************:****:********************************

    COL             ILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGADAIMLITPYYNKTNQRGLVKH
    N315            ILKTVIDLVDKRVPVIAGTGTNDTEKSIQASFQAKALGADAIMLITPYYNKTNQRGLVKH
    NCTC8325        ILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGADAIMLITPYYNKTNQRGLVKH
    Newman          ILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGADAIMLITPYYNKTNQRGLVKH
    USA300_FPR3757  ILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGADAIMLITPYYNKTNQRGLVKH
                    *******************************:****************************

    COL             FEAIADAVKLPVVLYNVPSRTNMTIEPETVEILSQHPYIVALKDATNDFEYLEEVKKRID
    N315            FEAITDAVKLPVVLYNVPSRTNMTIEPETVEILSQHPYIVALKDATNDFEYLEEVKKRID
    NCTC8325        FEAIADAVKLPVVLYNVPSRTNMTIEPETVEILSQHPYIVALKDATNDFEYLEEVKKRID
    Newman          FEAIADAVKLPVVLYNVPSRTNMTIEPETVEILSQHPYIVALKDATNDFEYLEEVKKRID
    USA300_FPR3757  FEAIADAVKLPVVLYNVPSRTNMTIEPETVEILSQHPYIVALKDATNDFEYLEEVKKRID
                    ****:*******************************************************

    COL             TNSFALYSGNDDNVVEYYQRGGQGVISVIANVIPKEFQALYDAQQSGLDIQDQFKPIGTL
    N315            TNSFALYSGNDDNVVEYYQRGGQGVISVIANVIPKEFQALYDAQQSGLDIQDQFKPIGTL
    NCTC8325        TNSFALYSGNDDNVVEYYQRGGQGVISVIANVIPKEFQALYDAQQSGLDIQDQFKPIGTL
    Newman          TNSFALYSGNDDNVVEYYQRGGQGVISVIANVIPKEFQALYDAQQSGLDIQDQFKPIGTL
    USA300_FPR3757  TNSFALYSGNDDNVVEYYQRGGQGVISVIANVIPKEFQALYDAQQSGLDIQDQFKPIGTL
                    ************************************************************

    COL             LSALSVDINPIPIKALTSYLGFGNYELRLPLVSLEDTDTKVLRETYDTFKAGENE
    N315            LSALSVDINPIPIKALTSYLEFGNYELRLPLVSLEDTDTKVLREAYDTFKAGENE
    NCTC8325        LSALSVDINPIPIKALTSYLGFGNYELRLPLVSLEDTDTKVLRETYDTFKAGENE
    Newman          LSALSVDINPIPIKALTSYLGFGNYELRLPLVSLEDTDTKVLRETYDTFKAGENE
    USA300_FPR3757  LSALSVDINPIPIKALTSYLGFGNYELRLPLVSLEDTDTKVLRETYDTFKAGENE
                    ******************** ***********************:**********