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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003909000
- symbol?: recU
- synonym:
- description?: Holliday junction resolvase RecU
- Holliday junction resolvase RecU
- Holliday junction-specific endonuclease
- putative recombination protein U
- Recombination protein RecU
- recombination protein U
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 4226672..4227349
- synteny block?: BlockID0029550
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1405 (recU)
08BA02176:
C248_1489 (recU)
11819-97:
MS7_1405 (recU)
6850:
RSAU_001321 (recU)
71193:
ST398NM01_1449
ECT-R 2:
ECTR2_1303 (recU)
ED133:
SAOV_1457 (recU)
ED98:
SAAV_1436 (recU)
HO 5096 0412:
SAEMRSA15_13100 (recU)
JH1:
SaurJH1_1537 (recU)
JH9:
SaurJH9_1508 (recU)
JKD6008:
SAA6008_01418 (recU)
JKD6159:
SAA6159_01314 (recU)
LGA251:
SARLGA251_13630 (recU)
M013:
M013TW_1397
MRSA252:
SAR1460 (recU)
MSHR1132:
SAMSHR1132_12890
MSSA476:
SAS1392 (recU)
Mu3:
SAHV_1437 (recU)
Mu50:
SAV1449 (recU)
MW2:
MW1339 (recU)
RF122:
SAB1313 (recU)
ST398:
SAPIG1449 (recU)
T0131:
SAT0131_01538 (apbA)
TCH60:
HMPREF0772_11755 (recU)
TW20:
SATW20_14480 (recU)
USA300_TCH1516:
USA300HOU_1387 (recU)
VC40:
SAVC_06500 (recU)
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL -----------------MNYPNGKPYRKNSAIDGGKKTAAFSNIEYGGRGMSLEKDIEHS
N315 -----------------MNYPNGKPYRKNSAIDGGKKTAAFSNIEYGGRGMSLEKDIEHS
NCTC8325 MLCIINNVYYQTCVVKFMNYPNGKPYRKNSAIDGGKKTAAFSNIEYGGRGMSLEKDIEHS
Newman MLCIINNVYYQTCVVKFMNYPNGKPYRKNSAIDGGKKTAAFSNIEYGGRGMSLEKDIEHS
USA300_FPR3757 -----------------MNYPNGKPYRKNSAIDGGKKTAAFSNIEYGGRGMSLEKDIEHS
*******************************************
COL NTFYLKSDIAVIHKKPTPVQIVNVNYPKRSKAVINEAYFRTPSTTDYNGVYQGYYIDFEA
N315 NTFYLKSDIAVIHKKPTPVQIVNVNYPKRSKAVINEAYFRTPSTTDYNGVYQGYYIDFEA
NCTC8325 NTFYLKSDIAVIHKKPTPVQIVNVNYPKRSKAVINEAYFRTPSTTDYNGVYQGYYIDFEA
Newman NTFYLKSDIAVIHKKPTPVQIVNVNYPKRSKAVINEAYFRTPSTTDYNGVYQGYYIDFEA
USA300_FPR3757 NTFYLKSDIAVIHKKPTPVQIVNVNYPKRSKAVINEAYFRTPSTTDYNGVYQGYYIDFEA
************************************************************
COL KETKNKTSFPLNNIHDHQVEHMKNAYQQKGIVFLMIRFKTLDEVYLLPYSKFEVFWKRYK
N315 KETKNKTSFPLNNIHDHQVEHMKNAYQQKGIVFLMIRFKTLDEVYLLPYSKFEVFWKRYK
NCTC8325 KETKNKTSFPLNNIHDHQVEHMKNAYQQKGIVFLMIRFKTLDEVYLLPYSKFEVFWKRYK
Newman KETKNKTSFPLNNIHDHQVEHMKNAYQQKGIVFLMIRFKTLDEVYLLPYSKFEVFWKRYK
USA300_FPR3757 KETKNKTSFPLNNIHDHQVEHMKNAYQQKGIVFLMIRFKTLDEVYLLPYSKFEVFWKRYK
************************************************************
COL DNIKKSITVDEIRKNGYHIPYQYQPRLDYLKAVDKLILDESEDRV
N315 DNIKKSITVDEIRKNGYHIPYQYQPRLDYLKAVDKLILDESEDRV
NCTC8325 DNIKKSITVDEIRKNGYHIPYQYQPRLDYLKAVDKLILDESEDRV
Newman DNIKKSITVDEIRKNGYHIPYQYQPRLDYLKAVDKLILDESEDRV
USA300_FPR3757 DNIKKSITVDEIRKNGYHIPYQYQPRLDYLKAVDKLILDESEDRV
*********************************************