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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003917000
- symbol?: papS
- synonym:
- description?: tRNA CCA-pyrophosphorylase
- tRNA CCA-pyrophosphorylase
- CCA-adding enzyme
- CCA tRNA nucleotidyltransferase
- poly A polymerase family protein
- cca-adding enzyme (trnanucleotidyltransferase) (trna adenylyl-/cytidylyl-transferase) (trnacca-pyrophosphorylase) (trna-nt)
- poly A polymerase head domain protein
- polynucleotide adenylyltransferase
- tRNA nucleotidyltransferase
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4237704..4238907
- synteny block?: BlockID0029630
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1413
08BA02176:
C248_1497 (papS)
11819-97:
MS7_1413
6850:
RSAU_001329
71193:
ST398NM01_1457
ECT-R 2:
ECTR2_1311
ED133:
SAOV_1465 (papS)
ED98:
SAAV_1444 (papS)
HO 5096 0412:
SAEMRSA15_13180 (papS)
JH1:
SaurJH1_1545
JH9:
SaurJH9_1516
JKD6008:
SAA6008_01426 (papS)
JKD6159:
SAA6159_01322 (papS)
LGA251:
SARLGA251_13710 (papS)
M013:
M013TW_1405
MRSA252:
SAR1468 (papS)
MSHR1132:
SAMSHR1132_12970
MSSA476:
SAS1400
Mu3:
SAHV_1445
Mu50:
SAV1457
MW2:
MW1347
RF122:
SAB1321c (papS)
ST398:
SAPIG1457
T0131:
SAT0131_01546
TCH60:
HMPREF0772_11747 (papS)
TW20:
SATW20_14560 (papS)
USA300_TCH1516:
USA300HOU_1395 (pcnB)
VC40:
SAVC_06540
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MDKSLFEQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT
N315 MDKSLFEQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT
NCTC8325 MDKSLFEQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT
Newman MDKSLFEQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT
USA300_FPR3757 MDKSLFEQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHT
************************************************************
COL IPVGKEHGTINVVFNDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIA
N315 IPVGKEHGTINVVFNDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIA
NCTC8325 IPVGKEHGTINVVFNDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIA
Newman IPVGKEHGTINVVFNDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIA
USA300_FPR3757 IPVGKEHGTINVVFNDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIA
************************************************************
COL MDTAYKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQLSFDIATETFEA
N315 MDTAYKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQLSFDIAMETFEA
NCTC8325 MDTAYKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQLSFDIATETFEA
Newman MDTAYKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQLSFDIATETFEA
USA300_FPR3757 MDTAYKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQLSFDIATETFEA
****************************************************** *****
COL MRIQMADIKFLSIERIVIELTKLMRGINVEKSFNHLKSLKAFNYMPYFEHLDMNQINVTE
N315 MRTQMADIKFLSIERIVIELTKLMRGINVEESFNHLKSLKAFNYMPYFEQLDMNQINVTE
NCTC8325 MRIQMADIKFLSIERIVIELTKLMRGINVEKSFNHLKSLKAFNYMPYFEHLDMNQINVTE
Newman MRIQMADIKFLSIERIVIELTKLMRGINVEKSFNHLKSLKAFNYMPYFEHLDMNQINVTE
USA300_FPR3757 MRIQMADIKFLSIERIVIELTKLMRGINVEKSFNHLKSLKAFNYMPYFEHLDMNQINVTE
** ***************************:******************:**********
COL AIDLELLIAIVSVKFDINYSLKPLKLSNRQVKDINQYIQIMNALPSIITKEQLKMFVYDY
N315 PIDLELLIAIVSVKFDINYSLKPLKLSNRQVKDINQYIQIMNALPSIITKEQLKMFVYDY
NCTC8325 AIDLELLIAIVSVKFDINYSLKPLKLSNRQVKDINQYIQIMNALPSIITKEQLKMFVYDY
Newman AIDLELLIAIVSVKFDINYSLKPLKLSNRQVKDINQYIQIMNALPSIITKEQLKMFVYDY
USA300_FPR3757 AIDLELLIAIVSVKFDINYSLKPLKLSNRQVKDINQYIQIMNALPSIITKEQLKMFVYDY
.***********************************************************
COL DTHLIKNVMVAADVLKANDIQGHEPLIVNLQTIDETLHRLPMHNRKDMMVNGGVLMAHLN
N315 DTNLIKNVMVAADVLKANDIQGHEPLIVNLQTIDETLHRLPMHNRKDMMVNGGVLMAHLN
NCTC8325 DTHLIKNVMVAADVLKANDIQGHEPLIVNLQTIDETLHRLPMHNRKDMMVNGGVLMAHLN
Newman DTHLIKNVMVAADVLKANDIQGHEPLIVNLQTIDETLHRLPMHNRKDMMVNGGVLMAHLN
USA300_FPR3757 DTHLIKNVMVAADVLKANDIQGHEPLIVNLQTIDETLHRLPMHNRKDMMVNGGVLMAHLN
**:*********************************************************
COL AKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWVDNHVKI
N315 AKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWVDNHVKI
NCTC8325 AKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWVDNHVKI
Newman AKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWVDNHVKI
USA300_FPR3757 AKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWVDNHVKI
****************************************