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Summary[edit source | edit]

  • pan ID?: SAUPAN004030000
  • symbol?: xerD
  • description?: tyrosine recombinase XerD

      descriptions from strain specific annotations:

    • tyrosine recombinase XerD
    • integrase/recombinase XerD
    • site-specific recombinase
    • Site-specific recombinase XerD
  • strand?: -
  • coordinates?: 4319967..4320854
  • synteny block?: BlockID0030670
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1540 (xerD)
    N315:
    SA1328 (xerD)
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_1454 (xerD)
    08BA02176:
    C248_1537 (xerD)
    11819-97:
    MS7_1514 (xerD)
    71193:
    ST398NM01_1563
    ECT-R 2:
    ECTR2_1348 (xerD)
    ED133:
    SAOV_1499 (xerD)
    ED98:
    SAAV_1487 (xerD)
    HO 5096 0412:
    SAEMRSA15_14190 (xerD)
    JH1:
    SaurJH1_1585
    JH9:
    SaurJH9_1554
    JKD6008:
    SAA6008_01467 (xerD)
    JKD6159:
    SAA6159_01426 (xerD)
    LGA251:
    SARLGA251_14050 (xerD)
    M013:
    M013TW_1511
    MRSA252:
    SAR1573 (xerD)
    MSHR1132:
    SAMSHR1132_13360
    MSSA476:
    SAS1437
    Mu3:
    SAHV_1485 (xerD)
    Mu50:
    SAV1497 (xerD)
    MW2:
    MW1451 (xerD)
    RF122:
    SAB1358c (xerD)
    ST398:
    SAPIG1563 (xerD)
    T0131:
    SAT0131_01590 (ndhF)
    TCH60:
    HMPREF0772_11644 (xerD)
    TW20:
    SATW20_14950 (xerD)
    USA300_TCH1516:
    USA300HOU_1498 (xerD)
    VC40:
    SAVC_06735

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             METIIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHL
    N315            METIIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHL
    NCTC8325        METIIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHL
    Newman          METIIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHL
    USA300_FPR3757  METIIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHL
                    ************************************************************

    COL             IDQGQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALL
    N315            IDQGQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALL
    NCTC8325        IDQGQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALL
    Newman          IDQGQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALL
    USA300_FPR3757  IDQGQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALL
                    ************************************************************

    COL             ETPDLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLG
    N315            ETPDLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLG
    NCTC8325        ETPDLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLG
    Newman          ETPDLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLG
    USA300_FPR3757  ETPDLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLG
                    ************************************************************

    COL             DAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTP
    N315            DAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTP
    NCTC8325        DAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTP
    Newman          DAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTP
    USA300_FPR3757  DAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTP
                    ************************************************************

    COL             HTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHPRA
    N315            HTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHPRA
    NCTC8325        HTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHPRA
    Newman          HTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHPRA
    USA300_FPR3757  HTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHPRA
                    *******************************************************