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Summary[edit source | edit]

  • pan ID?: SAUPAN004063000
  • symbol?: gnd
  • description?: 6-phosphogluconate dehydrogenase

      descriptions from strain specific annotations:

    • 6-phosphogluconate dehydrogenase
    • 6-phosphogluconate dehydrogenase, decarboxylating
  • strand?: -
  • coordinates?: 4346141..4347547
  • synteny block?: BlockID0030950
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1554 (gnd)
    N315:
    SA1342 (gnd)
    NCTC8325:
    Newman:
    NWMN_1417 (gnd)
    USA300_FPR3757:
    04-02981:
    SA2981_1468 (gnd)
    08BA02176:
    C248_1552 (gnd)
    11819-97:
    MS7_1528 (gnd)
    71193:
    ST398NM01_1576
    ECT-R 2:
    ECTR2_1362 (gnd)
    ED133:
    SAOV_1512 (gnd)
    ED98:
    SAAV_1502
    HO 5096 0412:
    SAEMRSA15_14320 (gnd)
    JH1:
    SaurJH1_1601
    JH9:
    SaurJH9_1569
    JKD6008:
    SAA6008_01480 (gnd)
    JKD6159:
    SAA6159_01447 (gnd)
    LGA251:
    SARLGA251_14180 (gnd)
    M013:
    M013TW_1526
    MRSA252:
    SAR1589 (gnd)
    MSHR1132:
    SAMSHR1132_13510
    MSSA476:
    SAS1450
    Mu3:
    SAHV_1499 (gnd)
    Mu50:
    SAV1511 (gnd)
    MW2:
    MW1464 (gnd)
    RF122:
    SAB1384c (gnd)
    ST398:
    SAPIG1576 (gnd)
    T0131:
    SAT0131_01604 (metB)
    TCH60:
    HMPREF0772_11629 (gnd)
    TW20:
    SATW20_15080 (gnd)
    USA300_TCH1516:
    USA300HOU_1512 (pgd)
    VC40:
    SAVC_06800

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MTQQIGVIGLAVMGKNLAWNIESRGYSVSVFNRSSEKTDLMVEESKGKNIHPTYSLEEFV
    N315            MTQQIGVIGLAVMGKNLAWNIESRGYSVSVFNRSSEKTDLMVEESKGKNIHPTYSLEEFV
    NCTC8325        MTQQIGVIGLAVMGKNLAWNIESRGYSVSVFNRSSEKTDLMVEESKGKNIHPTYSLEEFV
    Newman          MTQQIGVIGLAVMGKNLAWNIESRGYSVSVFNRSSEKTDLMVEESKGKNIHPTYSLEEFV
    USA300_FPR3757  MTQQIGVIGLAVMGKNLAWNIESRGYSVSVFNRSSEKTDLMVEESKGKNIHPTYSLEEFV
                    ************************************************************

    COL             NSLEKPRKILLMVQAGKATDATIDSLLPLLDDGDILIDGGNTNYQDTIRRNKALAQSAIN
    N315            NSLEKPRKILLMVQAGKATDATIDSLLPLLDDGDILIDGGNTNYQDTIRRNKALAQSAIN
    NCTC8325        NSLEKPRKILLMVQAGKATDATIDSLLPLLDDGDILIDGGNTNYQDTIRRNKALAQSAIN
    Newman          NSLEKPRKILLMVQAGKATDATIDSLLPLLDDGDILIDGGNTNYQDTIRRNKALAQSAIN
    USA300_FPR3757  NSLEKPRKILLMVQAGKATDATIDSLLPLLDDGDILIDGGNTNYQDTIRRNKALAQSAIN
                    ************************************************************

    COL             FIGMGVSGGEIGALTGPSLMPGGQEEAYNKVADILDAIAAKAKDGASCVTYIGPNGAGHY
    N315            FIGMGVSGGEIGALTGPSLMPGGQEEAYNKVADILDAIAAKAKDGASCVTYIGPNGAGHY
    NCTC8325        FIGMGVSGGEIGALTGPSLMPGGQEEAYNKVADILDAIAAKAKDGASCVTYIGPNGAGHY
    Newman          FIGMGVSGGEIGALTGPSLMPGGQEEAYNKVADILDAIAAKAKDGASCVTYIGPNGAGHY
    USA300_FPR3757  FIGMGVSGGEIGALTGPSLMPGGQEEAYNKVADILDAIAAKAKDGASCVTYIGPNGAGHY
                    ************************************************************

    COL             VKMVHNGIEYADMQLIAESYAMMKELLGMSHEDIAQTFKDWNAGELESYLIEITGDIFMK
    N315            VKMVHNGIEYADMQLIAESYAMMKELLGMSHEDIAQTFKDWNAGELESYLIEITGDIFMK
    NCTC8325        VKMVHNGIEYADMQLIAESYAMMKELLGMSHEDIAQTFKDWNAGELESYLIEITGDIFMK
    Newman          VKMVHNGIEYADMQLIAESYAMMKELLGMSHEDIAQTFKDWNAGELESYLIEITGDIFMK
    USA300_FPR3757  VKMVHNGIEYADMQLIAESYAMMKELLGMSHEDIAQTFKDWNAGELESYLIEITGDIFMK
                    ************************************************************

    COL             LDENKEALVEKILDTAGQKGTGKWTSINALELGIPLTIITESVFARFISSIKEERVNASK
    N315            LDENKEALVEKILDTAGQKGTGKWTSINALELGIPLTIITESVFARFISSIKEERVNASK
    NCTC8325        LDENKEALVEKILDTAGQKGTGKWTSINALELGIPLTIITESVFARFISSIKEERVNASK
    Newman          LDENKEALVEKILDTAGQKGTGKWTSINALELGIPLTIITESVFARFISSIKEERVNASK
    USA300_FPR3757  LDENKEALVEKILDTAGQKGTGKWTSINALELGIPLTIITESVFARFISSIKEERVNASK
                    ************************************************************

    COL             ELNGPKASFDGDKKDFLEKIRKALYMSKICSYAQGFAQMRKASEDNEWNLKLGDLAMIWR
    N315            ELNGPKASFDGDKKDFLEKIRKALYMSKICSYAQGFAQMRKASEDNEWNLKLGDLAMIWR
    NCTC8325        ELNGPKASFDGDKKDFLEKIRKALYMSKICSYAQGFAQMRKASEDNEWNLKLGDLAMIWR
    Newman          ELNGPKASFDGDKKDFLEKIRKALYMSKICSYAQGFAQMRKASEDNEWNLKLGDLAMIWR
    USA300_FPR3757  ELNGPKASFDGDKKDFLEKIRKALYMSKICSYAQGFAQMRKASEDNEWNLKLGDLAMIWR
                    ************************************************************

    COL             EGCIIRAQFLQKIKDAYDNNPGLQNLLLDPYFKNIVTEYQDALRDVVATGVQNGVPTPGF
    N315            EGCIIRAQFLQKIKDAYDNNPGLQNLLLDPYFKNIVTEYQDALRDVVATGVQNGVPTPGF
    NCTC8325        EGCIIRAQFLQKIKDAYDNNPGLQNLLLDPYFKNIVTEYQDALRDVVATGVQNGVPTPGF
    Newman          EGCIIRAQFLQKIKDAYDNNPGLQNLLLDPYFKNIVTEYQDALRDVVATGVQNGVPTPGF
    USA300_FPR3757  EGCIIRAQFLQKIKDAYDNNPGLQNLLLDPYFKNIVTEYQDALRDVVATGVQNGVPTPGF
                    ************************************************************

    COL             SSSINYYDSYRAADLPANLIQAQRDYFGAHTYERKDKEGVFHTQWIEE
    N315            SSSINYYDSYRAADLPANLIQAQRDYFGAHTYERKDKEGVFHTQWIEE
    NCTC8325        SSSINYYDSYRAADLPANLIQAQRDYFGAHTYERKDKEGVFHTQWIEE
    Newman          SSSINYYDSYRAADLPANLIQAQRDYFGAHTYERKDKEGVFHTQWIEE
    USA300_FPR3757  SSSINYYDSYRAADLPANLIQAQRDYFGAHTYERKDKEGVFHTQWIEE
                    ************************************************