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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

Summary[edit source | edit]

  • pan ID?: SAUPAN004094000
  • symbol?:
  • description?: membrane protein

      descriptions from strain specific annotations:

    • membrane protein
    • Ribonuclease E domain-containing protein
  • strand?: -
  • coordinates?: 4371050..4372897
  • synteny block?: BlockID0031240
  • occurrence?: in 28% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    08BA02176:
    11819-97:
    71193:
    ECT-R 2:
    ED133:
    ED98:
    HO 5096 0412:
    SAEMRSA15_12360
    JH1:
    JH9:
    JKD6008:
    SAA6008_02634
    JKD6159:
    LGA251:
    M013:
    MRSA252:
    SAR1291
    MSHR1132:
    SAMSHR1132_15360
    MSSA476:
    Mu3:
    Mu50:
    MW2:
    RF122:
    ST398:
    T0131:
    SAT0131_02809 (thrC)
    TCH60:
    TW20:
    SATW20_27160
    USA300_TCH1516:
    USA300HOU_0629
    VC40:

Genome Viewer[edit source | edit]

COL chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MKHKSVYLLCFLILPILLLTSVSAYAVSNPVGEPSHAVKPKIEKYDLSHYRSIYSEKGDW
    USA300_FPR3757  MKHKSVYLLCFLILPILLLTSVSAYAVSNPVGEPSHAVKPKIEKYDLSHYRSIYSEKGDW
                    ************************************************************

    COL             NPFGQEEISRQINNVSDFFFSMTKILAGVTDYAIENLFQLDVINDFADKIGDFVGDIYQK
    USA300_FPR3757  NPFGQEEISRQINNVSDFFFSMTKILAGVTDYAIENLFQLDVINDFADKIGDFVGDIYQK
                    ************************************************************

    COL             LLSNLAITLFIIVCFNAFIIFSVQGNAREALKRAFLIMCLIGFGVGILANAGNIIRGTNN
    USA300_FPR3757  LLSNLALTLFIIVCFNAFIIFSVQGNAREALKRAFLIMCLIGFGVGILANAGNIIRGTNN
                    ******:*****************************************************

    COL             IGKDLNNIIMNSTSSIDGNIDYIHENSGMNHIRNQLFDMTIYRTYLVMNYGTVDEKEIKA
    USA300_FPR3757  IGKDLNNIIMNSTSSIDGNIDYIHENSGMNHIRNQLFDMTIYRTYLVMNYGTVDEKEIKA
                    ************************************************************

    COL             KGKDRIDNILKQDFSKKGQDEIDKIVKNEVEKKDNKYMTQGYVFQKLAISVIGFIITVFM
    USA300_FPR3757  KGKDRIDNILKLDYDKKSEKELDDIVKDEVEKKNNKYMTQGYVFQKLAISVIGFIITLFM
                    *********** *:.**.:.*:*.***:*****:***********************:**

    COL             SIVFLSISFAKLIFSTFALFLFLFLVFSWIVSFIPGFELSVFSAFAKTLGYIILSACMTF
    USA300_FPR3757  SIVFLSISFAKLIFSTFALFLFLFLVFSWIVSFIPGFELSVFSAFAKTLGYIILSACMTF
                    ************************************************************

    COL             LFVIVGLCIKLANSFIEPDSQNAYFLNSIFIIVILFVMYKKRAQIINFVSRGNISFSPSA
    USA300_FPR3757  LFVIVGLCIKLANSFIEPDSQNAYFLNSIFIIVILFVMYKKRAQIINFVSRGNISFSPSA
                    ************************************************************

    COL             IGAGVMNRTQERFNKIRHEQAQNKKAKRENQRDEPAPPLQNDNDLRRRQQDKPMPLFINK
    USA300_FPR3757  IGAGVMNRTQERFNKIRHEQAQNKKAKRENQRDEPAPPLQNDNDLRRRQQDKPMPLFINK
                    ************************************************************

    COL             DNQKNGNKRREQQESMNGNDVKSASVESNANDYSKQPQKASQQEHQVRETRQRKDIQRSP
    USA300_FPR3757  DNQKNGNKRREQQESMNGNDVKSASVESNANNYSKQPQKASQQEHQVRETRQRKDIQRSP
                    *******************************:****************************

    COL             QVVNQPLNNENHSINRKEQKSVQTAYDTDVQKRQIQNATQNQQSRQSGNRNQPITRNSQS
    USA300_FPR3757  QVVNQPLNNENHSINRKEQKSVQTAYDTDVQKRQIQNATQNQQSRQSGNRNQPITRNSQS
                    ************************************************************

    COL             KDRLKEQKDINKHGK
    USA300_FPR3757  KDRLKEQKDINKHGK
                    ***************