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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 10-JUN-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL1577 [new locus tag: SACOL_RS08035 ]
  • pan locus tag?: SAUPAN004094000
  • symbol: SACOL1577
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL1577 [new locus tag: SACOL_RS08035 ]
  • symbol: SACOL1577
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1611280..1613127
  • length: 1848
  • essential: unknown

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    ATGAAGCATAAAAGTGTGTATCTTTTATGCTTTTTAATTTTGCCTATTCTGCTTTTAACA
    TCTGTGAGTGCTTACGCTGTTTCTAATCCAGTTGGAGAGCCCTCACATGCAGTTAAGCCC
    AAAATTGAAAAGTATGATTTATCACATTATCGTTCAATATATAGTGAAAAAGGCGACTGG
    AATCCGTTTGGTCAAGAAGAAATTTCACGACAAATTAATAATGTGTCAGATTTTTTCTTT
    TCTATGACTAAGATTTTAGCAGGTGTTACAGATTATGCGATTGAAAATTTATTTCAACTA
    GATGTTATTAATGATTTTGCGGATAAAATCGGCGATTTTGTTGGCGATATATATCAAAAG
    TTATTGAGTAATTTGGCAATAACATTATTTATTATTGTTTGTTTTAACGCATTTATTATT
    TTTAGTGTACAAGGTAATGCAAGAGAAGCATTAAAGCGAGCGTTTTTAATTATGTGTTTG
    ATTGGTTTTGGTGTTGGTATACTTGCGAATGCAGGTAATATTATACGTGGTACAAACAAT
    ATTGGTAAGGATTTGAATAATATAATTATGAATAGTACATCTTCTATTGATGGGAACATT
    GATTATATTCATGAGAATTCAGGTATGAATCATATACGTAATCAATTATTTGATATGACG
    ATATATAGAACATATTTAGTAATGAATTATGGAACTGTAGACGAAAAAGAGATAAAAGCA
    AAAGGTAAAGACCGTATTGATAACATTTTAAAACAAGATTTTTCAAAAAAAGGACAAGAT
    GAGATTGATAAAATTGTAAAAAATGAGGTTGAGAAAAAAGATAATAAATATATGACGCAA
    GGTTATGTATTTCAAAAGTTGGCTATTTCAGTTATTGGCTTTATTATTACTGTTTTTATG
    TCAATTGTATTTTTATCAATTAGTTTTGCGAAGTTGATTTTTTCTACATTTGCTTTATTT
    TTATTCTTATTTTTAGTATTCAGTTGGATAGTGAGTTTTATACCAGGATTTGAATTATCT
    GTTTTCTCTGCGTTTGCAAAAACGTTAGGCTATATTATTTTAAGTGCCTGTATGACATTC
    TTATTTGTGATAGTTGGTTTGTGTATCAAGCTTGCAAATAGTTTTATTGAACCGGATAGT
    CAAAATGCTTATTTTTTAAATTCAATATTTATAATTGTAATATTGTTTGTAATGTATAAA
    AAACGGGCTCAAATTATCAATTTTGTAAGTCGTGGTAATATTAGTTTTTCTCCTAGTGCA
    ATTGGTGCTGGTGTGATGAATCGAACACAAGAACGTTTTAATAAGATTCGTCATGAACAA
    GCGCAAAATAAGAAAGCTAAACGAGAAAATCAAAGAGATGAACCCGCCCCACCACTTCAA
    AATGATAATGATTTAAGAAGAAGACAGCAGGATAAACCAATGCCTTTATTTATAAATAAA
    GATAATCAAAAAAATGGTAATAAGCGAAGAGAACAACAAGAGTCAATGAATGGTAATGAT
    GTAAAATCTGCTTCTGTTGAATCAAATGCAAATGATTATTCTAAACAACCACAAAAAGCA
    TCACAGCAAGAGCATCAAGTACGAGAAACAAGACAGCGAAAAGATATACAAAGGTCGCCA
    CAAGTGGTTAATCAGCCATTAAATAATGAGAATCATTCAATAAATCGTAAAGAACAGAAG
    TCAGTTCAAACTGCTTATGATACTGATGTTCAAAAACGACAAATACAAAATGCGACACAG
    AATCAACAAAGTAGACAATCTGGAAATCGTAATCAACCTATTACACGTAATTCTCAGTCA
    AAAGACCGTCTAAAAGAGCAAAAGGATATCAATAAGCATGGTAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1848

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL1577 [new locus tag: SACOL_RS08035 ]
  • symbol: SACOL1577
  • description: hypothetical protein
  • length: 615
  • theoretical pI: 9.93274
  • theoretical MW: 70343.1
  • GRAVY: -0.341138

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase (TIGR03025; HMM-score: 15.6)
  • TheSEED:  
    hypothetical protein transposon-related 
  • PFAM:
    no clan definedDUF4131; Domain of unknown function (DUF4131) (PF13567; HMM-score: 7.5)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0
    • Signal Peptide Possibility: 1
    • N-terminally Anchored Score: -2
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: Signal peptide length 27 aa
    • Ymax: 0.546
    • Ymax_pos: 27
    • Cmax: 0.354
    • Cmax_pos: 27
    • Smax: 0.909
    • Smax_pos: 23
    • Smean: 0.791
    • D: 0.642
  • predicted transmembrane helices (TMHMM): 7

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MKHKSVYLLCFLILPILLLTSVSAYAVSNPVGEPSHAVKPKIEKYDLSHYRSIYSEKGDWNPFGQEEISRQINNVSDFFFSMTKILAGVTDYAIENLFQLDVINDFADKIGDFVGDIYQKLLSNLAITLFIIVCFNAFIIFSVQGNAREALKRAFLIMCLIGFGVGILANAGNIIRGTNNIGKDLNNIIMNSTSSIDGNIDYIHENSGMNHIRNQLFDMTIYRTYLVMNYGTVDEKEIKAKGKDRIDNILKQDFSKKGQDEIDKIVKNEVEKKDNKYMTQGYVFQKLAISVIGFIITVFMSIVFLSISFAKLIFSTFALFLFLFLVFSWIVSFIPGFELSVFSAFAKTLGYIILSACMTFLFVIVGLCIKLANSFIEPDSQNAYFLNSIFIIVILFVMYKKRAQIINFVSRGNISFSPSAIGAGVMNRTQERFNKIRHEQAQNKKAKRENQRDEPAPPLQNDNDLRRRQQDKPMPLFINKDNQKNGNKRREQQESMNGNDVKSASVESNANDYSKQPQKASQQEHQVRETRQRKDIQRSPQVVNQPLNNENHSINRKEQKSVQTAYDTDVQKRQIQNATQNQQSRQSGNRNQPITRNSQSKDRLKEQKDINKHGK

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]