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Summary[edit source | edit]

  • pan ID?: SAUPAN004108000
  • symbol?:
  • description?: putative lipoprotein

      descriptions from strain specific annotations:

    • putative lipoprotein
    • Lipoprotein
    • lipoprotein, putative
  • strand?: +
  • coordinates?: 4384786..4385370
  • synteny block?: BlockID0031380
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_1489
    08BA02176:
    C248_1573
    11819-97:
    MS7_1548
    71193:
    ST398NM01_1596
    ECT-R 2:
    ECTR2_1382
    ED133:
    SAOV_1531
    ED98:
    SAAV_1523
    HO 5096 0412:
    SAEMRSA15_14510
    JH1:
    SaurJH1_1622
    JH9:
    SaurJH9_1589
    JKD6008:
    SAA6008_01500
    JKD6159:
    SAA6159_01466
    LGA251:
    SARLGA251_14370
    M013:
    M013TW_1546
    MRSA252:
    SAR1608
    MSHR1132:
    SAMSHR1132_13710
    MSSA476:
    SAS1469
    Mu3:
    SAHV_1518
    Mu50:
    SAV1531
    MW2:
    MW1483
    RF122:
    SAB1403
    ST398:
    SAPIG1596
    T0131:
    SAT0131_01624
    TCH60:
    HMPREF0772_11610
    TW20:
    SATW20_15270
    USA300_TCH1516:
    USA300HOU_1532
    VC40:
    SAVC_06900

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MKKLVSIVGATLLLAGCGSQNLAPLEEKTTDLREDNHQLKLDIQELNQQISDSKSKIKGL
    N315            MKKLVSIVGATLLLAGCGSQNLAPLEEKTTDLREDNHQLKLDIQELNQQISDSKSKIKGL
    NCTC8325        MKKLVSIVGATLLLAGCGSQNLAPLEEKTTDLREDNHQLKLDIQELNQQISDSKSKIKGL
    Newman          MKKLVSIVGATLLLAGCGSQNLAPLEEKTTDLREDNHQLKLDIQELNQQISDSKSKIKGL
    USA300_FPR3757  MKKLVSIVGATLLLAGCGSQNLAPLEEKTTDLREDNHQLKLDIQELNQQISDSKSKIKGL
                    ************************************************************

    COL             EKDKENSKKTASNNTKIKLMNVTSTYYDKVAKALKSYNDIEKDVSKNKGDKNVQSKLNQI
    N315            EKDKENSKKTASNNTKIKLMNVTSTYYDKVAKALKSYNDIEKDVSKNKGDKNVQSKLNQI
    NCTC8325        EKDKENSKKTASNNTKIKLMNVTSTYYDKVAKALKSYNDIEKDVSKNKGDKNVQSKLNQI
    Newman          EKDKENSKKTASNNTKIKLMNVTSTYYDKVAKALKSYNDIEKDVSKNKGDKNVQSKLNQI
    USA300_FPR3757  EKDKENSKKTASNNTKIKLMNVTSTYYDKVAKALKSYNDIEKDVSKNKGDKNVQSKLNQI
                    ************************************************************

    COL             SNDIQSAHTSYKDAIDGLSLSDDDKKTSKNIDKLNSDLNHAFDDIKNGYQNKDKKQLTKG
    N315            SNDIQSAHTSYKDAIDGLSLSDDDKKTSKNIDKLNSDLNHAFDDIKNGYQNKDKKQLTKG
    NCTC8325        SNDIQSAHTSYKDAIDGLSLSDDDKKTSKNIDKLNSDLNHAFDDIKNGYQNKDKKQLTKG
    Newman          SNDIQSAHTSYKDAIDGLSLSDDDKKTSKNIDKLNSDLNHAFDDIKNGYQNKDKKQLTKG
    USA300_FPR3757  SNDIQSAHTSYKDAIDGLSLSDDDKKTSKNIDKLNSDLNHAFDDIKNGYQNKDKKQLTKG
                    ************************************************************

    COL             QQALSKLNLNAKS
    N315            QQALSKLNLNAKS
    NCTC8325        QQALSKLNLNAKS
    Newman          QQALSKLNLNAKS
    USA300_FPR3757  QQALSKLNLNAKS
                    *************