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Summary[edit source | edit]

  • pan ID?: SAUPAN004150000
  • symbol?: cdd
  • description?: cytidine deaminase
  • strand?: -
  • coordinates?: 4418423..4418827
  • synteny block?: BlockID0031800
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1625 (cdd)
    N315:
    SA1397 (cdd)
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_1526 (cdd)
    08BA02176:
    C248_1611 (cdd)
    11819-97:
    MS7_1585 (cdd)
    71193:
    ST398NM01_1633
    ECT-R 2:
    ECTR2_1418 (cdd)
    ED133:
    SAOV_1568 (cdd)
    ED98:
    SAAV_1560 (cdd)
    HO 5096 0412:
    SAEMRSA15_14880 (cdd)
    JH1:
    SaurJH1_1660
    JH9:
    SaurJH9_1626
    JKD6008:
    SAA6008_01538 (cdd)
    JKD6159:
    SAA6159_01503 (cdd)
    LGA251:
    SARLGA251_14740 (cdd)
    M013:
    M013TW_1583
    MRSA252:
    SAR1645 (cdd)
    MSHR1132:
    SAMSHR1132_14080
    MSSA476:
    SAS1506
    Mu3:
    SAHV_1555 (cdd)
    Mu50:
    SAV1568 (cdd)
    MW2:
    MW1520 (cdd)
    RF122:
    SAB1440c (cdd)
    ST398:
    SAPIG1633 (cdd)
    T0131:
    SAT0131_01664 (tilS)
    TCH60:
    HMPREF0772_11572 (cdd)
    TW20:
    SATW20_15640 (cdd)
    USA300_TCH1516:
    USA300HOU_1569 (cdd)
    VC40:
    SAVC_07090

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MSYQPHYFQEVRKAQQESYSPYSQFKVGAYLKTKDGRTFYGTNVENASYPLSICAERASL
    N315            MSYQPHYFQEVRKAQQESYSPYSQFKVGAYLKTKDGRTFYGTNVENASYPLSICAERASL
    NCTC8325        MSYQPHYFQEVRKAQQESYSPYSQFKVGAYLKTKDGRTFYGTNVENASYPLSICAERASL
    Newman          MSYQPHYFQEVRKAQQESYSPYSQFKVGAYLKTKDGRTFYGTNVENASYPLSICAERASL
    USA300_FPR3757  MSYQPHYFQEVRKAQQESYSPYSQFKVGAYLKTKDGRTFYGTNVENASYPLSICAERASL
                    ************************************************************

    COL             VSAISQGYRPGDFESITVTVDADKPSSPCGACRQVLKELCDDDMPVYMTNHKGDMVMMTV
    N315            VSAISQGYRPGDFESITVTVDADKPSSPCGACRQVLKELCDDDMPVYMTNHKGDMVMMTV
    NCTC8325        VSAISQGYRPGDFESITVTVDADKPSSPCGACRQVLKELCDDDMPVYMTNHKGDMVMMTV
    Newman          VSAISQGYRPGDFESITVTVDADKPSSPCGACRQVLKELCDDDMPVYMTNHKGDMVMMTV
    USA300_FPR3757  VSAISQGYRPGDFESITVTVDADKPSSPCGACRQVLKELCDDDMPVYMTNHKGDMVMMTV
                    ************************************************************

    COL             AELLPFGFSGKDLE
    N315            AELLPFGFSGKDLE
    NCTC8325        AELLPFGFSGKDLE
    Newman          AELLPFGFSGKDLE
    USA300_FPR3757  AELLPFGFSGKDLE
                    **************