From AureoWiki
Jump to: navigation, search

Summary[edit source | edit]

  • pan ID?: SAUPAN004165000
  • symbol?: hrcA
  • description?: heat-inducible transcriptional repressor

      descriptions from strain specific annotations:

    • heat-inducible transcriptional repressor
    • heat-inducible transcription repressor HrcA
    • heat shock transcriptional repressor HrcA
  • strand?: -
  • coordinates?: 4431024..4432001
  • synteny block?: BlockID0031950
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1639 (hrcA)
    N315:
    SA1411 (hrcA)
    NCTC8325:
    Newman:
    NWMN_1485 (hrcA)
    USA300_FPR3757:
    04-02981:
    SA2981_1540 (hrcA)
    08BA02176:
    C248_1625 (hrcA)
    11819-97:
    MS7_1599 (hrcA)
    71193:
    ST398NM01_1648
    ECT-R 2:
    ECTR2_1432 (hrcA)
    ED133:
    SAOV_1582 (hrcA)
    ED98:
    SAAV_1574 (hrcA)
    HO 5096 0412:
    SAEMRSA15_15020 (hrcA)
    JH1:
    SaurJH1_1674
    JH9:
    SaurJH9_1640
    JKD6008:
    SAA6008_01552 (hrcA)
    JKD6159:
    SAA6159_01517 (hrcA)
    LGA251:
    SARLGA251_14880 (hrcA)
    M013:
    M013TW_1597
    MRSA252:
    SAR1659 (hrcA)
    MSHR1132:
    SAMSHR1132_14220
    MSSA476:
    SAS1520
    Mu3:
    SAHV_1569 (hrcA)
    Mu50:
    SAV1582 (hrcA)
    MW2:
    MW1534 (hrcA)
    RF122:
    SAB1454c (hrcA)
    ST398:
    SAPIG1648 (hrcA)
    T0131:
    SAT0131_01678
    TCH60:
    HMPREF0772_11558 (hrcA)
    TW20:
    SATW20_15780 (hrcA)
    USA300_TCH1516:
    USA300HOU_1583 (hrcA)
    VC40:
    SAVC_07165

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MITDRQLSILNAIVEDYVDFGQPVGSKTLIERHNLNVSPATIRNEMKQLEDLNYIEKTHS
    N315            MITDRQLSILNAIVEDYVDFGQPVGSKTLIERHNLNVSPATIRNEMKQLEDLNYIEKTHS
    NCTC8325        MITDRQLSILNAIVEDYVDFGQPVGSKTLIERHNLNVSPATIRNEMKQLEDLNYIEKTHS
    Newman          MITDRQLSILNAIVEDYVDFGQPVGSKTLIERHNLNVSPATIRNEMKQLEDLNYIEKTHS
    USA300_FPR3757  MITDRQLSILNAIVEDYVDFGQPVGSKTLIERHNLNVSPATIRNEMKQLEDLNYIEKTHS
                    ************************************************************

    COL             SSGRSPSQLGFRYYVNRLLEQTSHQKTNKLRRLNQLLVENQYDVSSALTYFADELSNISQ
    N315            SSGRSPSQLGFRYYVNRLLEQTSHQKTNKLRRLNQLLVENQYDVSSALTYFADELSNISQ
    NCTC8325        SSGRSPSQLGFRYYVNRLLEQTSHQKTNKLRRLNQLLVENQYDVSSALTYFADELSNISQ
    Newman          SSGRSPSQLGFRYYVNRLLEQTSHQKTNKLRRLNQLLVENQYDVSSALTYFADELSNISQ
    USA300_FPR3757  SSGRSPSQLGFRYYVNRLLEQTSHQKTNKLRRLNQLLVENQYDVSSALTYFADELSNISQ
                    ************************************************************

    COL             YTTLVVHPNHKQDIINNVHLIRANPNLVIMVIVFSSGHVEHVHLASDIPFNNDKLNTISN
    N315            YTTLVVHPNHKQDIINNVHLIRANPNLVIMVIVFSSGHVEHVHLASDIPFSNDKLNTISN
    NCTC8325        YTTLVVHPNHKQDIINNVHLIRANPNLVIMVIVFSSGHVEHVHLASDIPFNNDKLNTISN
    Newman          YTTLVVHPNHKQDIINNVHLIRANPNLVIMVIVFSSGHVEHVHLASDIPFNNDKLNTISN
    USA300_FPR3757  YTTLVVHPNHKQDIINNVHLIRANPNLVIMVIVFSSGHVEHVHLASDIPFNNDKLNTISN
                    **************************************************.*********

    COL             FVTNKLTEFNQNLQDDIVSFVQSEQEEIFINKLLNTMNNHISNQSNSIYMGGKVKLIDAL
    N315            FVTNKLTEFNQNLQDDIVSFVQSEQEEIFINKLINTMNNHISNQSNSIYMGGKVKLIDAL
    NCTC8325        FVTNKLTEFNQNLQDDIVSFVQSEQEEIFINKLLNTMNNHISNQSNSIYMGGKVKLIDAL
    Newman          FVTNKLTEFNQNLQDDIVSFVQSEQEEIFINKLLNTMNNHISNQSNSIYMGGKVKLIDAL
    USA300_FPR3757  FVTNKLTEFNQNLQDDIVSFVQSEQEEIFINKLLNTMNNHISNQSNSIYMGGKVKLIDAL
                    *********************************:**************************

    COL             NESNVSSIQPILQYIESNRIAELLQDISSPNINVKIGNEIDDSLSDISIVTSQYHFDETL
    N315            NESNVSSIQPILQYIESNRIAELLQDISSPNINVKIGNEIDDSLSDISIVTSQYHFDETL
    NCTC8325        NESNVSSIQPILQYIESNRIAELLQDISSPNINVKIGNEIDDSLSDISIVTSQYHFDETL
    Newman          NESNVSSIQPILQYIESNRIAELLQDISSPNINVKIGNEIDDSLSDISIVTSQYHFDETL
    USA300_FPR3757  NESNVSSIQPILQYIESNRIAELLQDISSPNINVKIGNEIDDSLSDISIVTSQYHFDETL
                    ************************************************************

    COL             KGQIAVIGPTAMHYQNVIQLLNRIW
    N315            KGQIAVIGPTAMHYQNVIQLLNRIW
    NCTC8325        KGQIAVIGPTAMHYQNVIQLLNRIW
    Newman          KGQIAVIGPTAMHYQNVIQLLNRIW
    USA300_FPR3757  KGQIAVIGPTAMHYQNVIQLLNRIW
                    *************************