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Summary[edit source | edit]

  • pan ID?: SAUPAN004277000
  • symbol?: tag
  • description?: DNA-3-methyladenine glycosylase I

      descriptions from strain specific annotations:

    • DNA-3-methyladenine glycosylase I
    • DNA-3-methyladenine glycosidase
    • DNA-3-methyladenine glycosylase
    • DNA-3-methyladenine glycosylase 1
  • strand?: +
  • coordinates?: 4524050..4524650
  • synteny block?: BlockID0033010
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    SA1489 (tag)
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_1623 (tag)
    08BA02176:
    C248_1706 (tag)
    11819-97:
    MS7_1672 (tag)
    71193:
    ST398NM01_1719
    ECT-R 2:
    ECTR2_1505
    ED133:
    SAOV_1653 (tag)
    ED98:
    SAAV_1651
    HO 5096 0412:
    SAEMRSA15_15750 (tag)
    JH1:
    SaurJH1_1756
    JH9:
    SaurJH9_1722
    JKD6008:
    SAA6008_01632 (tag)
    JKD6159:
    SAA6159_01590 (tag)
    LGA251:
    SARLGA251_15580 (tag)
    M013:
    M013TW_1678
    MRSA252:
    SAR1744 (tag)
    MSHR1132:
    SAMSHR1132_14930
    MSSA476:
    SAS1593
    Mu3:
    SAHV_1651 (tag)
    Mu50:
    SAV1664 (tag)
    MW2:
    MW1608 (tag)
    RF122:
    SAB1525 (tag)
    ST398:
    SAPIG1719 (tag)
    T0131:
    SAT0131_01765 (opp1D)
    TCH60:
    HMPREF0772_11485 (tag)
    TW20:
    SATW20_16560 (tag)
    USA300_TCH1516:
    USA300HOU_1656 (tag)
    VC40:
    SAVC_07535

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MNECAFGTKDPVYLDYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEASEEAF
    N315            MNECAFGTKDPVYLNYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEAF
    NCTC8325        MNECAFGTKDPVYLDYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEAF
    Newman          MNECAFGTKDPVYLDYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEAF
    USA300_FPR3757  MNECAFGTKDPVYLDYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEAF
                    **************:**************************************** ****

    COL             YDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSYV
    N315            YDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSYV
    NCTC8325        YDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSYV
    Newman          YDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSYV
    USA300_FPR3757  YDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSYV
                    ************************************************************

    COL             NGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGPVTVFSFLEAAGLYDAHLQDCP
    N315            NGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGPVTVFSFLEAAGLYDAHLKDCP
    NCTC8325        NGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGPVTVFSFLEAAGLYDAHLQDCP
    Newman          NGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGPVTVFSFLEAAGLYDAHLQDCP
    USA300_FPR3757  NGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGPVTVFSFLEAAGLYDAHLQDCP
                    ********************************************************:***

    COL             SKPKHN
    N315            SKPKHN
    NCTC8325        SKPKHN
    Newman          SKPKHN
    USA300_FPR3757  SKPKHN
                    ******