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Summary[edit source | edit]

  • pan ID?: SAUPAN004309000
  • symbol?: gapB
  • description?: glyceraldehyde 3-phosphate dehydrogenase 2

      descriptions from strain specific annotations:

    • glyceraldehyde 3-phosphate dehydrogenase 2
    • aldehyde dehydrogenase
    • glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)
    • NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase
    • glyceraldehyde-3-phosphate dehydrogenase, type I
  • strand?: -
  • coordinates?: 4548126..4549151
  • synteny block?: BlockID0033330
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1734 (gapA2)
    N315:
    SA1510 (gapB)
    NCTC8325:
    Newman:
    NWMN_1580 (gapB)
    USA300_FPR3757:
    04-02981:
    SA2981_1646 (gapB)
    08BA02176:
    C248_1729 (gap2)
    11819-97:
    MS7_1694
    71193:
    ST398NM01_1741
    ECT-R 2:
    ECTR2_1527 (gap)
    ED133:
    SAOV_1675 (gap_1)
    ED98:
    SAAV_1677 (gapA2)
    HO 5096 0412:
    SAEMRSA15_15970 (gap2)
    JH1:
    SaurJH1_1778
    JH9:
    SaurJH9_1744
    JKD6008:
    SAA6008_01654 (gapB)
    JKD6159:
    SAA6159_01611 (gapB)
    LGA251:
    SARLGA251_15790 (gap2)
    M013:
    M013TW_1700
    MRSA252:
    SAR1766 (gap2)
    MSHR1132:
    SAMSHR1132_15140
    MSSA476:
    SAS1615
    Mu3:
    SAHV_1673 (gapB)
    Mu50:
    SAV1687 (gapB)
    MW2:
    MW1630 (gapB)
    RF122:
    SAB1546c (gap)
    ST398:
    SAPIG1741 (gap)
    T0131:
    SAT0131_01789
    TCH60:
    HMPREF0772_11464 (gap)
    TW20:
    SATW20_16770 (gap2)
    USA300_TCH1516:
    USA300HOU_1674 (gapB)
    VC40:
    SAVC_07640

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MSTNIAINGMGRIGRMVLRIALQNKNLNVVAINASYPPETIAHLINYDTTHGKYNLKVEP
    N315            MSTNIAINGMGRIGRMVLRIALQNKNLNVVAINASYPPETIAHLINYDTTHGKYNLKVEP
    NCTC8325        MSTNIAINGMGRIGRMVLRIALQNKNLNVVAINASYPPETIAHLINYDTTHGKYNLKVEP
    Newman          MSTNIAINGMGRIGRMVLRIALQNKNLNVVAINASYPPETIAHLINYDTTHGKYNLKVEP
    USA300_FPR3757  MSTNIAINGMGRIGRMVLRIALQNKNLNVVAINASYPPETIAHLINYDTTHGKYNLKVEP
                    ************************************************************

    COL             IENGLQVGDHKIKLVADRNPENLPWKELDIDIAIDATGKFNHGDKAIAHIKAGAKKVLLT
    N315            IENGLQVGDHKIKLVADRNPENLPWKELDIDIAIDATGKFNHGDKAIAHIKAGAKKVLLT
    NCTC8325        IENGLQVGDHKIKLVADRNPENLPWKELDIDIAIDATGKFNHGDKAIAHIKAGAKKVLLT
    Newman          IENGLQVGDHKIKLVADRNPENLPWKELDIDIAIDATGKFNHGDKAIAHIKAGAKKVLLT
    USA300_FPR3757  IENGLQVGDHKIKLVADRNPENLPWKELDIDIAIDATGKFNHGDKAIAHIKAGAKKVLLT
                    ************************************************************

    COL             GPSKGGHVQMVVKGVNDNQLDIEAFDIFSNASCTTNCIGPVAKVLNNQFGIVNGLMTTVH
    N315            GPSKGGHVQMVVKGVNDNQLDIEAFDIFSNASCTTNCIGPVAKVLNNQFGIVNGLMTTVH
    NCTC8325        GPSKGGHVQMVVKGVNDNQLDIEAFDIFSNASCTTNCIGPVAKVLNNQFGIVNGLMTTVH
    Newman          GPSKGGHVQMVVKGVNDNQLDIEAFDIFSNASCTTNCIGPVAKVLNNQFGIVNGLMTTVH
    USA300_FPR3757  GPSKGGHVQMVVKGVNDNQLDIEAFDIFSNASCTTNCIGPVAKVLNNQFGIVNGLMTTVH
                    ************************************************************

    COL             AITNDQKNIDNPHKDLRRARSCNESIIPTSTGAAKALKEVLPELEGKLHGMALRVPTKNV
    N315            AITNDQKNIDNPHKDLRRARSCNESIIPTSTGAAKALKEVLPELEGKLHGMALRVPTKNV
    NCTC8325        AITNDQKNIDNPHKDLRRARSCNESIIPTSTGAAKALKEVLPELEGKLHGMALRVPTKNV
    Newman          AITNDQKNIDNPHKDLRRARSCNESIIPTSTGAAKALKEVLPELEGKLHGMALRVPTKNV
    USA300_FPR3757  AITNDQKNIDNPHKDLRRARSCNESIIPTSTGAAKALKEVLPELEGKLHGMALRVPTKNV
                    ************************************************************

    COL             SLVDLVVDLEKEVTAEEVNQAFENAGLEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVM
    N315            SLVDLVVDLEKEVTAEEVNQAFENAGLEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVM
    NCTC8325        SLVDLVVDLEKEVTAEEVNQAFENAGLEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVM
    Newman          SLVDLVVDLEKEVTAEEVNQAFENAGLEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVM
    USA300_FPR3757  SLVDLVVDLEKEVTAEEVNQAFENAGLEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVM
                    ************************************************************

    COL             SGNKVKVIAWYDNEWGYSNRVVDVAEQIGALLTSKETVSAS
    N315            SGNKVKVIAWYDNEWGYSNRVVDVAEQIGALLTSKETVSAS
    NCTC8325        SGNKVKVIAWYDNEWGYSNRVVDVAEQIGALLTSKETVSAS
    Newman          SGNKVKVIAWYDNEWGYSNRVVDVAEQIGALLTSKETVSAS
    USA300_FPR3757  SGNKVKVIAWYDNEWGYSNRVVDVAEQIGALLTSKETVSAS
                    *****************************************