From AureoWiki
Jump to: navigation, search

Summary[edit source | edit]

  • pan ID?: SAUPAN004388000
  • symbol?: tyrS
  • description?: tyrosyl-tRNA synthetase

      descriptions from strain specific annotations:

    • tyrosyl-tRNA synthetase
    • tyrosine--tRNA ligase
    • tyrosyl-tRNA synthetase, TyrS
  • strand?: -
  • coordinates?: 4627250..4628512
  • synteny block?: BlockID0033920
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1778 (tyrS)
    N315:
    SA1550 (tyrS)
    NCTC8325:
    Newman:
    NWMN_1622 (tyrS)
    USA300_FPR3757:
    04-02981:
    SA2981_1687 (tyrS)
    08BA02176:
    C248_1771 (tyrS)
    11819-97:
    MS7_1735 (tyrS)
    71193:
    ST398NM01_1781
    ECT-R 2:
    ECTR2_1569 (tyrS)
    ED133:
    SAOV_1715
    ED98:
    SAAV_1739 (tyrS)
    HO 5096 0412:
    SAEMRSA15_16370 (tyrS)
    JH1:
    SaurJH1_1819
    JH9:
    SaurJH9_1784
    JKD6008:
    SAA6008_01698 (tyrS)
    JKD6159:
    SAA6159_01652 (tyrS)
    LGA251:
    SARLGA251_16190 (tyrS)
    M013:
    M013TW_1743
    MRSA252:
    SAR1806 (tyrS)
    MSHR1132:
    SAMSHR1132_15790
    MSSA476:
    SAS1655
    Mu3:
    SAHV_1715 (tyrS)
    Mu50:
    SAV1729 (tyrS)
    MW2:
    MW1671 (tyrS)
    RF122:
    SAB1587c (tyrS)
    ST398:
    SAPIG1781 (tyrS)
    T0131:
    SAT0131_01832
    TCH60:
    HMPREF0772_11424 (tyrS)
    TW20:
    SATW20_17190 (tyrS)
    USA300_TCH1516:
    USA300HOU_1717 (tyrS)
    VC40:
    SAVC_07850

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MTNVLIEDLKWRGLIYQQTDEQGIEDLLNKEQVTLYCGADPTADSLHIGHLLPFLTLRRF
    N315            MTNVLIEDLKWRGLIYQQTDEQGIEDLLNKEQVTLYCGADPTADSLHIGHLLPFLTLRRF
    NCTC8325        MTNVLIEDLKWRGLIYQQTDEQGIEDLLNKEQVTLYCGADPTADSLHIGHLLPFLTLRRF
    Newman          MTNVLIEDLKWRGLIYQQTDEQGIEDLLNKEQVTLYCGADPTADSLHIGHLLPFLTLRRF
    USA300_FPR3757  MTNVLIEDLKWRGLIYQQTDEQGIEDLLNKEQVTLYCGADPTADSLHIGHLLPFLTLRRF
                    ************************************************************

    COL             QEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQIHNIFEFGTDHGAV
    N315            QEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMHNIFEFGTDHGAV
    NCTC8325        QEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMHNIFEFGTDHGAV
    Newman          QEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMHNIFEFGTDHGAV
    USA300_FPR3757  QEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMHNIFEFGTDHGAV
                    **********************************************:*************

    COL             LVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRLEHGISYTEFTYTILQAIDFGH
    N315            LVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRLEHGISYTEFTYTILQAIDFGH
    NCTC8325        LVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRLEHGISYTEFTYTILQAIDFGH
    Newman          LVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRLEHGISYTEFTYTILQAIDFGH
    USA300_FPR3757  LVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRLEHGISYTEFTYTILQAIDFGH
                    ************************************************************

    COL             LNRELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAV
    N315            LNRELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAV
    NCTC8325        LNRELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAV
    Newman          LNRELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAV
    USA300_FPR3757  LNRELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAV
                    ************************************************************

    COL             WLDAEKTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHLREAQKTLA
    N315            WLDAEKTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHLREAQKTLA
    NCTC8325        WLDAEKTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHLREAQKTLA
    Newman          WLDAEKTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHLREAQKTLA
    USA300_FPR3757  WLDAEKTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHLREAQKTLA
                    ************************************************************

    COL             EEVTKFIHGEDALNDAIRISQALFSGDLKSLSAKELKDGFKDVPQVTLSNDTTNIVEVLI
    N315            EEVTKFIHGEDALNDAIRISQALFSGDLKSLSAKELKDGFKDVPQVTLSNDTTNIVEVLI
    NCTC8325        EEVTKFIHGEDALNDAIRISQALFSGDLKSLSAKELKDGFKDVPQVTLSNDTTNIVEVLI
    Newman          EEVTKFIHGEDALNDAIRISQALFSGDLKSLSAKELKDGFKDVPQVTLSNDTTNIVEVLI
    USA300_FPR3757  EEVTKFIHGEDALNDAIRISQALFSGDLKSLSAKELKDGFKDVPQVTLSNDTTNIVEVLI
                    ************************************************************

    COL             ETGISPSKRQAREDVNNGAIYINGERQQDVNYALAPEDKIDGEFTIIRRGKKKYFMVNYQ
    N315            ETGISPSKRQAREDVNNGAIYINGERQQDVNYALAPEDKIDGEFTIIRRGKKKYFMVNYQ
    NCTC8325        ETGISPSKRQAREDVNNGAIYINGERQQDVNYALAPEDKIDGEFTIIRRGKKKYFMVNYQ
    Newman          ETGISPSKRQAREDVNNGAIYINGERQQDVNYALAPEDKIDGEFTIIRRGKKKYFMVNYQ
    USA300_FPR3757  ETGISPSKRQAREDVNNGAIYINGERQQDVNYALAPEDKIDGEFTIIRRGKKKYFMVNYQ
                    ************************************************************