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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004514000
- symbol?: —
- synonym:
- description?: calcium-binding protein
- calcium-binding protein
- calcium-binding lipoprotein, putative
- putative lipoprotein
- endonuclease
- excalibur calcium-binding domain protein
- excalibur domain-containing protein
- excalibur domain protein
- Excalibur extracellular calcium-binding domain protein
- pseudogene
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 4742352..4743178
- synteny block?: BlockID0035050
- occurrence?: in 91% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1754
08BA02176:
C248_1843
11819-97:
MS7_1797
6850:
RSAU_001651
71193:
ST398NM01_1867
ECT-R 2:
ECTR2_1633
ED133:
SAOV_1779
ED98:
SAAV_1808
HO 5096 0412:
SAEMRSA15_17060
JH1:
SaurJH1_1885
JH9:
SaurJH9_1849
JKD6008:
SAA6008_01774
JKD6159:
—
LGA251:
SARLGA251_16820
M013:
M013TW_1808
MRSA252:
SAR1879
MSHR1132:
—
MSSA476:
SAS1719
Mu3:
SAHV_1784
Mu50:
SAV1799
MW2:
MW1737
RF122:
SAB1653
ST398:
SAPIG1867
T0131:
SAT0131_01915
TCH60:
HMPREF0772_11358
TW20:
SATW20_17880
USA300_TCH1516:
USA300HOU_1786
VC40:
SAVC_08205
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKITYKYRGDLPLNTENNKNQNQSVKNSERRGMLKGCGGCLISFILLIILLSACSMMFSN
N315 ------------MNTENNKNQNQSVKNSERRGMLKGCGGCLISFILLIILLSACSMMFSN
NCTC8325 MKITYKYRGDLPLNTENNKNQNQSVKNSERRGMLKGCGGCLISFILLIILLSACSMMFSN
USA300_FPR3757 MKITYKYRGDLPLNTENNKNQNQSVKNSERRGMLKGCGGCLISFILLIILLSACSMMFSN
:***********************************************
COL NDNSTNNQSSKTQLTQKDENKNEDKPEEKSETATDEDLQSTEEVPANENTENNQHEIDEI
N315 NDNSTSNQSSKTQLTQKDENKNEDKPEEKSETATDEDLQSTEEVPANENTENNQHEIDEI
NCTC8325 NDNSTNNQSSKTQLTQKDENKNEDKPEEKSETATDEDLQSTEEVPANENTENNQHEIDEI
USA300_FPR3757 NDNSTNNQSSKTQLTQKDENKNEDKPEEKSETATDEDLQSTEEVPANENTENNQHEIDEI
*****.******************************************************
COL TTKDQSDDDINTPNVAEDKSQDDLKDDLKEKQQSSNHHQSTQPKTSPSTETNTQQSFANC
N315 TTKDQSDDEINTPNVAEDKSQDDLKDDLKEKQQSSNHHQSTQPKTSPSTETNRQQSFANC
NCTC8325 TTKDQSDDDINTPNVAEDKSQDDLKDDLKEKQQSSNHHQSTQPKTSPSTETNTQQSFANC
USA300_FPR3757 TTKDQSDDDINTPNVAEDKSQDDLKDDLKEKQQSSNHHQSTQPKTSPSTETNTQQSFANC
********:******************************************* *******
COL KQLRQVYPNGVTADHPAYRPHLDRDKDKRACEPDKY
N315 KQLRQVYPNGVTADHPAYRPHLDRDKDNRACEPDKN
NCTC8325 KQLRQVYPNGVTADHPAYRPHLDRDKDKRACEPDKY
USA300_FPR3757 KQLRQVYPNGVTADHPAYRPHLDRDKDKRACEPDKY
***************************:*******