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Summary[edit source | edit]

  • pan ID?: SAUPAN004518000
  • symbol?:
  • description?: lipoprotein

      descriptions from strain specific annotations:

    • lipoprotein
    • lipoprotein, putative
    • pseudogene
    • putative lipoprotein
  • strand?: +
  • coordinates?: 4744336..4744962
  • synteny block?: BlockID0035090
  • occurrence?: in 97% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_1756
    08BA02176:
    C248_1845
    11819-97:
    MS7_1799
    71193:
    ST398NM01_1869
    ECT-R 2:
    ECTR2_1635
    ED133:
    SAOV_1781
    ED98:
    SAAV_1810
    HO 5096 0412:
    SAEMRSA15_17080
    JH1:
    SaurJH1_1887
    JH9:
    SaurJH9_1851
    JKD6008:
    SAA6008_01776
    JKD6159:
    SAA6159_01718
    LGA251:
    M013:
    M013TW_1810
    MRSA252:
    SAR1881
    MSHR1132:
    SAMSHR1132_16450
    MSSA476:
    SAS1721
    Mu3:
    SAHV_1786
    Mu50:
    SAV1801
    MW2:
    MW1739
    RF122:
    SAB1655
    ST398:
    SAPIG1869
    T0131:
    SAT0131_01917 (gntK)
    TCH60:
    HMPREF0772_11356
    TW20:
    SATW20_17900
    USA300_TCH1516:
    USA300HOU_1788
    VC40:
    SAVC_08215

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MKFKAIVAITLSLSLLTACGANQHKENSSKSNDTNKKTQQTDNTTQSNTEKQMTPQEAED
    N315            MKFKAIVAITLSFSLLTACGANQHKENNSKSNDTTKKTQETDNTTQSNTEKQMTPQEAED
    NCTC8325        MKFKAIVAITLSLSLLTACGANQHKENSSKSNDTNKKTQQTDNTTQSNTEKQMTPQEAED
    Newman          MKFKAIVAITLSLSLLTACGANQHKENSSKSNDTNKKTQQTDNTTQSNTEKQMTPQEAED
    USA300_FPR3757  ----------------------------------------------------MTPQEAED
                                                                        ********

    COL             IVRNDYKARGVNEYQTLNYKTNLERSNEHEYYVEHLVRDAVGTPLKRCAIVNRHNGTIIN
    N315            IVRNDYKARGANENQTLNYKTNLERSNEHEYYVEHLVRDAVGTPLKRCAIVNRHNGTIIN
    NCTC8325        IVRNDYKARGVNEYQTLNYKTNLERSNEHEYYVEHLVRDAVGTPLKRCAIVNRHNGTIIN
    Newman          IVRNDYKARGVNEYQTLNYKTNLERSNEHEYYVEHLVRDAVGTPLKRCAIVNRHNGTIIN
    USA300_FPR3757  IVRNDYKARGVNEYQTLNYKTNLERSNEHEYYVEHLVRDAVGTPLKRCAIVNRHNGTIIN
                    **********.** **********************************************

    COL             IFDDMSEKDKEEFEAFKKRSPKYNPGMNNHDETDGESEDIQHHDIDNNKAIQNDIPDQKV
    N315            IFDDMSEKDKEEFEAFKKRSPKYNPGMSDHDKTDGESEDIQHHDNDNNKAIQNDTPDQKA
    NCTC8325        IFDDMSEKDKEEFEAFKKRSPKYNPGMNNHDETDGESEDIQHHDIDNNKAIQNDIPDQKV
    Newman          IFDDMSEKDKEEFEAFKKRSPKYNPGMNNHDETDGESEDIQHHDIDNNKAIQNDIPDQKV
    USA300_FPR3757  IFDDMSEKDKEEFEAFKKRSPKYNPGMNNHDETDGESEDIQHHDIDNNKAIQNDIPDQKV
                    ***************************.:**:************ ********* ****.

    COL             DDKNDKNAVNKEEKHDNGANNSEETKVK
    N315            VDKNDKNAVNKEEKHDNHAKNSAETKVK
    NCTC8325        DDKNDKNAVNKEEKHDNGANNSEETKVK
    Newman          DDKNDKNAVNKEEKHDNGANNSEETKVK
    USA300_FPR3757  DDKNDKNAVNKEEKHDNGANNSEETKVK
                     **************** *:** *****