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Summary[edit source | edit]

  • pan ID?: SAUPAN004784000
  • symbol?: fumC
  • description?: fumarate hydratase

      descriptions from strain specific annotations:

    • fumarate hydratase
    • class II fumarate hydratase
    • fumarate hydratase, class-II
    • Fumarate hydratase class II
  • strand?: -
  • coordinates?: 4994289..4995674
  • synteny block?: BlockID0037160
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL1908 (fumC)
    N315:
    SA1669 (fumC)
    NCTC8325:
    Newman:
    NWMN_1743 (fumC)
    USA300_FPR3757:
    04-02981:
    SA2981_1807 (citG)
    08BA02176:
    C248_1894 (citG)
    11819-97:
    MS7_1856 (fumC)
    71193:
    ST398NM01_1917
    ECT-R 2:
    ECTR2_1693 (fumC)
    ED133:
    SAOV_1848 (citG)
    ED98:
    SAAV_1870 (fumC)
    HO 5096 0412:
    SAEMRSA15_17560 (citG)
    JH1:
    SaurJH1_1939 (fumC)
    JH9:
    SaurJH9_1905 (fumC)
    JKD6008:
    SAA6008_01808 (fumC)
    JKD6159:
    SAA6159_01779 (fumC)
    LGA251:
    SARLGA251_17340 (citG)
    M013:
    M013TW_1857
    MRSA252:
    SAR1942 (fumC)
    MSHR1132:
    SAMSHR1132_16970
    MSSA476:
    SAS1772 (fumC)
    Mu3:
    SAHV_1836 (fumC)
    Mu50:
    SAV1851 (fumC)
    MW2:
    MW1792 (fumC)
    RF122:
    SAB1784c (fumC)
    ST398:
    SAPIG1917 (fumC)
    T0131:
    SAT0131_01971
    TCH60:
    HMPREF0772_11293 (fumC)
    TW20:
    SATW20_18450 (citG)
    USA300_TCH1516:
    USA300HOU_1845 (fumC)
    VC40:
    SAVC_08500 (fumC)

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MSVRIEHDTFGEIEVPADKYWGAQTERSKRNFPVGKERMPIEVVYGFAQLKRAAAIANFD
    N315            MSVRIEHDTFGEIEVPADKYWGAQTERSKRNFPVGKERMPIEVVYGFAQLKRAAALANFD
    NCTC8325        MSVRIEHDTFGEIEVPADKYWGAQTERSKRNFPVGKERMPIEVVYGFAQLKRAAAIANFD
    Newman          MSVRIEHDTFGEIEVPADKYWGAQTERSKRNFPVGKERMPIEVVYGFAQLKRAAAIANFD
    USA300_FPR3757  MSVRIEHDTFGEIEVPADKYWGAQTERSKRNFPVGKERMPIEVVYGFAQLKRAAAIANFD
                    *******************************************************:****

    COL             LGKLSEAKKDAIVYACDQILSGELDEHFPLVVWQTGSGTQSNMNVNEVVSYVANMYLKDH
    N315            LGKLSEAKKDAIVYACDQILSGELDEHFPLVVWQTGSGTQSNMNVNEVVSYVANMYLKDH
    NCTC8325        LGKLSEAKKDAIVYACDQILSGELDEHFPLVVWQTGSGTQSNMNVNEVVSYVANMYLKDH
    Newman          LGKLSEAKKDAIVYACDQILSGELDEHFPLVVWQTGSGTQSNMNVNEVVSYVANMYLKDH
    USA300_FPR3757  LGKLSEAKKDAIVYACDQILSGELDEHFPLVVWQTGSGTQSNMNVNEVVSYVANMYLKDH
                    ************************************************************

    COL             QSDESIHPNDDVNKSQSSNDTFPTAMHVALYQEVETKLEPALKLLRNTLKEKEDKFDSII
    N315            QIDESIHPNDDVNESQSSNDTFPTAMHVALYQEVETKLEPALKLLRNTLKEKEDKFESII
    NCTC8325        QSDESIHPNDDVNKSQSSNDTFPTAMHVALYQEVETKLEPALKLLRNTLKEKEDKFDSII
    Newman          QSDESIHPNDDVNKSQSSNDTFPTAMHVALYQEVETKLEPALKLLRNTLKEKEDKFDSII
    USA300_FPR3757  QSDESIHPNDDVNKSQSSNDTFPTAMHVALYQEVETKLEPALKLLRNTLKEKEDKFDSII
                    * ***********:******************************************:***

    COL             KIGRTHLQDATPIKLGQEISGWRYMLDRCETMLSESKKHILNLAIGGTAVGTGINAHPEF
    N315            KIGRTHLQDATPIKLGQEISGWRYMLDRCEIMLSESKKHILNLAIGGTAVGTGINAHPEF
    NCTC8325        KIGRTHLQDATPIKLGQEISGWRYMLDRCETMLSESKKHILNLAIGGTAVGTGINAHPEF
    Newman          KIGRTHLQDATPIKLGQEISGWRYMLDRCETMLSESKKHILNLAIGGTAVGTGINAHPEF
    USA300_FPR3757  KIGRTHLQDATPIKLGQEISGWRYMLDRCETMLSESKKHILNLAIGGTAVGTGINAHPEF
                    ****************************** *****************************

    COL             GDKVAHYISENTGYPFVSSENKFHALTAHDEVVQLHGTLKALAGDLMKIANDVRWLASGP
    N315            GDKVAHYISENTGYPFVSSENKFHALTAHDEVVQLHGTLKALAGDLMKIANDVRWLASGP
    NCTC8325        GDKVAHYISENTGYPFVSSENKFHALTAHDEVVQLHGTLKALAGDLMKIANDVRWLASGP
    Newman          GDKVAHYISENTGYPFVSSENKFHALTAHDEVVQLHGTLKALAGDLMKIANDVRWLASGP
    USA300_FPR3757  GDKVAHYISENTGYPFVSSENKFHALTAHDEVVQLHGTLKALAGDLMKIANDVRWLASGP
                    ************************************************************

    COL             RAGLAEISIPENEPGSSIMPGKVNPTQCEMLTMVAVQVMGNDTVVGFASSQGNFELNVYK
    N315            RAGLAEISIPENEPGSSIMPGKVNPTQCEMLTMVAVQVMGNDTVVGFASSQGNFELNVYK
    NCTC8325        RAGLAEISIPENEPGSSIMPGKVNPTQCEMLTMVAVQVMGNDTVVGFASSQGNFELNVYK
    Newman          RAGLAEISIPENEPGSSIMPGKVNPTQCEMLTMVAVQVMGNDTVVGFASSQGNFELNVYK
    USA300_FPR3757  RAGLAEISIPENEPGSSIMPGKVNPTQCEMLTMVAVQVMGNDTVVGFASSQGNFELNVYK
                    ************************************************************

    COL             PVIMHNTLQSIYLLADGMETFNNNCAVGIEPIEENIDNYLNQSLMLVTALNPHIGYEKAA
    N315            PVIMHNTLQSIYLLADGMETFNNNCAVGIEPIEENIDNYLNQSLMLVTALNPHIGYEKAA
    NCTC8325        PVIMHNTLQSIYLLADGMETFNNNCAVGIEPIEENIDNYLNQSLMLVTALNPHIGYEKAA
    Newman          PVIMHNTLQSIYLLADGMETFNNNCAVGIEPIEENIDNYLNQSLMLVTALNPHIGYEKAA
    USA300_FPR3757  PVIMHNTLQSIYLLADGMETFNNNCAVGIEPIEENIDNYLNQSLMLVTALNPHIGYEKAA
                    ************************************************************

    COL             QIAKKAHKEGLTLKESAIQTGYVTEEQFEAWIKPEDMVDPH
    N315            QIAKKAHKEGLTLKESAIQTGYVTEEQFEAWIKPEDMVDPH
    NCTC8325        QIAKKAHKEGLTLKESAIQTGYVTEEQFEAWIKPEDMVDPH
    Newman          QIAKKAHKEGLTLKESAIQTGYVTEEQFEAWIKPEDMVDPH
    USA300_FPR3757  QIAKKAHKEGLTLKESAIQTGYVTEEQFEAWIKPEDMVDPH
                    *****************************************