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Summary[edit source | edit]

  • pan ID?: SAUPAN004901000
  • symbol?: vraT
  • description?: transporter

      descriptions from strain specific annotations:

    • transporter
    • transporter associated with VraSR
    • Transporter yvqF
  • strand?: -
  • coordinates?: 5096899..5097429
  • synteny block?: BlockID0038070
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_1842 (yvqF)
    08BA02176:
    C248_1958
    11819-97:
    MS7_1921
    71193:
    ST398NM01_1979
    ECT-R 2:
    ECTR2_1757
    ED133:
    SAOV_1984
    ED98:
    SAAV_1951
    HO 5096 0412:
    SAEMRSA15_17930
    JH1:
    SaurJH1_1974
    JH9:
    SaurJH9_1940
    JKD6008:
    SAA6008_01906
    JKD6159:
    SAA6159_01817
    LGA251:
    SARLGA251_17680
    M013:
    M013TW_1922
    MRSA252:
    SAR1976
    MSHR1132:
    SAMSHR1132_17310
    MSSA476:
    SAS1808
    Mu3:
    SAHV_1871
    Mu50:
    SAV1886
    MW2:
    MW1826
    RF122:
    SAB1818c
    ST398:
    SAPIG1979
    T0131:
    SAT0131_02010 (trxB)
    TCH60:
    HMPREF0772_11258
    TW20:
    SATW20_18800
    USA300_TCH1516:
    USA300HOU_1882
    VC40:
    SAVC_08685

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MTHKYISTQMLIIFTALMIIANFYYIFFEKIGFLLVLLLGCVLVYVGYLYFHKIRGLLAF
    N315            MTHKYISTQMLIIFTALMIIANFYYIFFEKIGFLLVLLLGCVLVYVGYLYFHKIRGLLAF
    NCTC8325        MTHKYISTQMLIIFTALMIIANFYYIFFEKIGFLLVLLLGCVLVYVGYLYFHKIRGLLAF
    Newman          MTHKYISTQMLIIFTALMIIANFYYIFFEKIGFLLVLLLGCVLVYVGYLYFHKIRGLLAF
    USA300_FPR3757  MTHKYISTQMLIIFTALMIIANFYYIFFEKIGFLLVLLLGCVLVYVGYLYFHKIRGLLAF
                    ************************************************************

    COL             WIGALLIAFTLLSNKYTIIILFVFLLLLIVRYLIHKFKPKKVVATDEVMTSPSFIKQKWF
    N315            WIGALLIAFTLLSNKYTIIILFVFLLLLIVRYLIHKFKPKKVVATDEVMTSPSFIKQKWF
    NCTC8325        WIGALLIAFTLLSNKYTIIILFVFLLLLIVRYLIHKFKPKKVVATDEVMTSPSFIKQKWF
    Newman          WIGALLIAFTLLSNKYTIIILFVFLLLLIVRYLIHKFKPKKVVATDEVMTSPSFIKQKWF
    USA300_FPR3757  WIGALLIAFTLLSNKYTIIILFVFLLLLIVRYLIHKFKPKKVVATDEVMTSPSFIKQKWF
                    ************************************************************

    COL             GEQRTPVYVYKWEDVQIQHGIGDLHIDLTKAANIKENNTIVVRHILGKVQVILPVNYNIN
    N315            GEQRTPVYVYKWEDVQIQHGIGDLHIDLTKAANIKENNTIVVRHILGKVQVILPVNYNIN
    NCTC8325        GEQRTPVYVYKWEDVQIQHGIGDLHIDLTKAANIKENNTIVVRHILGKVQVILPVNYNIN
    Newman          GEQRTPVYVYKWEDVQIQHGIGDLHIDLTKAANIKENNTIVVRHILGKVQVILPVNYNIN
    USA300_FPR3757  GEQRTPVYVYKWEDVQIQHGIGDLHIDLTKAANIKENNTIVVRHILGKVQVILPVNYNIN
                    ************************************************************

    COL             LHVAAFYGSTYVNEKSYKVENNNIHIEEMMKPDNYTVNIYVSTFIGDVEVIYR
    N315            LHVAAFYGSTYVNEKSYKVENNNIHIEEMMKPDNYTVNIYVSTFIGDVEVIYR
    NCTC8325        LHVAAFYGSTYVNEKSYKVENNNIHIEEMMKPDNYTVNIYVSTFIGDVEVIYR
    Newman          LHVAAFYGSTYVNEKSYKVENNNIHIEEMMKPDNYTVNIYVSTFIGDVEVIYR
    USA300_FPR3757  LHVAAFYGSTYVNEKSYKVENNNIHIEEMMKPDNYTVNIYVSTFIGDVEVIYR
                    *****************************************************