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Summary[edit source | edit]

  • pan ID?: SAUPAN005004000
  • symbol?:
  • description?: Aspartate aminotransferase

      descriptions from strain specific annotations:

    • Aspartate aminotransferase
    • aspartate transaminase
    • class I and II aminotransferase
  • strand?: +
  • coordinates?: 5183200..5184486
  • synteny block?: BlockID0038850
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_1894
    08BA02176:
    C248_2024
    11819-97:
    MS7_1971
    71193:
    ST398NM01_2057
    ECT-R 2:
    ECTR2_1808
    ED133:
    SAOV_2038
    ED98:
    SAAV_2004
    HO 5096 0412:
    SAEMRSA15_18520
    JH1:
    SaurJH1_2027
    JH9:
    SaurJH9_1994
    JKD6008:
    SAA6008_01960
    JKD6159:
    SAA6159_01867
    LGA251:
    SARLGA251_18200
    M013:
    M013TW_1973
    MRSA252:
    SAR2028
    MSHR1132:
    SAMSHR1132_17810
    MSSA476:
    SAS1860
    Mu3:
    SAHV_1921
    Mu50:
    SAV1936
    MW2:
    MW1878
    RF122:
    SAB1872
    ST398:
    SAPIG2057
    T0131:
    SAT0131_02066
    TCH60:
    HMPREF0772_11205
    TW20:
    SATW20_19300
    USA300_TCH1516:
    USA300HOU_1940
    VC40:
    SAVC_08945

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MNPLAQSLNEQLQQSNATAFTMLSDLGQNMFYPKGILSQSAEAKSTTYNATIGMATNKDG
    N315            MNPLAQSLNEQLQQSNATAFTMLSDLGQNMFYPKGILSQSAEAKSTTYNATIGMATNKDG
    NCTC8325        MNPLAQSLNEQLQQSNATAFTMLSDLGQNMFYPKGILSQSAEAKSTTYNATIGMATNKDG
    Newman          MNPLAQSLNEQLQQSNATAFTMLSDLGQNMFYPKGILSQSAEAKSTTYNATIGMATNKDG
    USA300_FPR3757  MNPLAQSLNEQLQQSNATAFTMLSDLGQNMFYPKGILSQSAEAKSTTYNATIGMATNKDG
                    ************************************************************

    COL             KMFASSLDAMFNDLTPDEIFPYVPPQGIEELRDLWQQKMLRDNPELSIDNMSLPIVTNAL
    N315            KMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSLPIVTNAL
    NCTC8325        KMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSLPIVTNAL
    Newman          KMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSLPIVTNAL
    USA300_FPR3757  KMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSLPIVTNAL
                    **********************.*************************************

    COL             THGLSLVGDLFVNQGDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGHYTTDSLVEA
    N315            THGLSLVGDLFVNQGDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGHYTTDSLVEA
    NCTC8325        THGLSLVGDLFVNQGDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGHYTTDSLVEA
    Newman          THGLSLVGDLFVNQGDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGHYTTDSLVEA
    USA300_FPR3757  THGLSLVGDLFVNQGDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGHYTTDSLVEA
                    ************************************************************

    COL             LQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVDAIKALADKGTKVIAVVDDAYYGLFYE
    N315            LQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVDAIKALADKGTKVIAVVDDAYYGLFYE
    NCTC8325        LQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVDAIKALADKGTKVIAVVDDAYYGLFYE
    Newman          LQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVDAIKALADKGTKVIAVVDDAYYGLFYE
    USA300_FPR3757  LQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVDAIKALADKGTKVIAVVDDAYYGLFYE
                    ************************************************************

    COL             DVYTQSLFTALSNLNSNAILPVRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKG
    N315            DVYTQSLFTALSNLNSNAILPVRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKG
    NCTC8325        DVYTQSLFTALSNLNSNAILPVRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKG
    Newman          DVYTQSLFTALSNLNSNAILPVRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKG
    USA300_FPR3757  DVYTQSLFTALSNLNSNAILPVRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKG
                    ************************************************************

    COL             LIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQA
    N315            LIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQA
    NCTC8325        LIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQA
    Newman          LIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQA
    USA300_FPR3757  LIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQA
                    ************************************************************

    COL             YDFNSGYFMAIKVHDVDPEELRKHLIEKYSIGVIALNATDIRIAFSCVEKEDIPHVFDSI
    N315            YDFNSGYFMAIKVHDVDPEELRKHLIEKYSIGVIALNATDIRIAFSCVEKEDIPHVFDSI
    NCTC8325        YDFNSGYFMAIKVHDVDPEELRKHLIEKYSIGVIALNATDIRIAFSCVEKEDIPHVFDSI
    Newman          YDFNSGYFMAIKVHDVDPEELRKHLIEKYSIGVIALNATDIRIAFSCVEKEDIPHVFDSI
    USA300_FPR3757  YDFNSGYFMAIKVHDVDPEELRKHLIEKYSIGVIALNATDIRIAFSCVEKEDIPHVFDSI
                    ************************************************************

    COL             AKAIDDLR
    N315            AKAIDDLR
    NCTC8325        AKAIDDLR
    Newman          AKAIDDLR
    USA300_FPR3757  AKAIDDLR
                    ********