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Summary[edit source | edit]

  • pan ID?: SAUPAN005011000
  • symbol?: hlb-1
  • description?: truncated beta-hemolysin

      descriptions from strain specific annotations:

    • truncated beta-hemolysin
    • truncated 6449-6450 beta-hemolysin
    • pseudogene
    • phospholipase C domain protein
  • strand?: +
  • coordinates?: 5191108..5191333
  • synteny block?: BlockID0038920
  • occurrence?: in 56% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    SA1752 (hlb)
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_1897 (hlb)
    08BA02176:
    11819-97:
    MS7_1974 (hlb)
    71193:
    ECT-R 2:
    ECTR2_1811
    ED133:
    ED98:
    SAAV_2007 (hlb)
    HO 5096 0412:
    SAEMRSA15_18540 (hlb)
    JH1:
    SaurJH1_2030
    JH9:
    SaurJH9_1997
    JKD6008:
    SAA6008_01957
    JKD6159:
    SAA6159_01870
    LGA251:
    M013:
    MRSA252:
    MSHR1132:
    MSSA476:
    Mu3:
    SAHV_1924
    Mu50:
    SAV1939
    MW2:
    MW1881 (hlb)
    RF122:
    ST398:
    T0131:
    SAT0131_02072
    TCH60:
    TW20:
    USA300_TCH1516:
    USA300HOU_1943 (hlb1)
    VC40:

Genome Viewer[edit source | edit]

N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    N315            --MMVKKTKSNSLKKVATLALANLLLVGALTDNSAKAESKKDDTDLKLVSHNVYMLSTVL
    NCTC8325        ---MVKKTKSNSLKKVATLALANLLLVGALTDNSAKAESKKDDTDLKLVSHNVYMLSTVL
    Newman          MIMMVKKTKSNSLKKVATLALANLLLVGALTDNSAKAESKKDDTDLKLVSHNVYMLSTVL
    USA300_FPR3757  ---MVKKTKSNSLKKVATLALANLLLVGALTDNSAKAESKKDDTDLKLVSHNVYMLSTVL
                       *********************************************************

    N315            YPNWRLLT
    NCTC8325        YPNWRLLT
    Newman          YPNWRLLT
    USA300_FPR3757  YPNWRLLT
                    ********