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Summary[edit source | edit]

  • pan ID?: SAUPAN005012000
  • symbol?: hlb-2
  • description?: phospholipase C

      descriptions from strain specific annotations:

    • phospholipase C
    • beta-hemolysin
    • pseudogene
    • truncated beta hemolysin
    • sphingomyelin phosphodiesterase
    • truncated beta-hemplysin
  • strand?: +
  • coordinates?: 5191148..5358414
  • synteny block?: BlockID0038930
  • occurrence?: in 88% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL2003 (hlb)
    N315:
    SA1811 (hlb)
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_1965 (hlb)
    08BA02176:
    C248_2026
    11819-97:
    MS7_2035 (sph)
    71193:
    ST398NM01_2059
    ECT-R 2:
    ECTR2_1875 (sph)
    ED133:
    SAOV_2040
    ED98:
    SAAV_2071 (hlb)
    HO 5096 0412:
    SAEMRSA15_18540b (hlb)
    JH1:
    SaurJH1_2098
    JH9:
    SaurJH9_2061
    JKD6008:
    SAA6008_02057
    JKD6159:
    SAA6159_01938
    LGA251:
    SARLGA251_18220 (hlb)
    M013:
    M013TW_1975
    MRSA252:
    MSHR1132:
    MSSA476:
    Mu3:
    SAHV_1989
    Mu50:
    SAV2003 (truncated-hlb)
    MW2:
    MW1940 (hlb)
    RF122:
    SAB1874
    ST398:
    SAPIG2059 (sph)
    T0131:
    SAT0131_02139
    TCH60:
    HMPREF0772_11179 (sph)
    TW20:
    USA300_TCH1516:
    USA300HOU_2010 (hlb2)
    VC40:
    SAVC_08960

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MVKKTKSNSLKKVATLALANLLLVGALTDNSAKAESKKDDTDLKLVSHNVYMLSTVLYPN
    N315            M---------------------------------------RDSKPNKYCCYKVS--MYPN
    NCTC8325        --------------------------------------------------------MYPN
    Newman          --------------------------------------------------------MYPN
    USA300_FPR3757  --------------------------------------------------------MYPN
                                                                            :***

    COL             WGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQTPVLGRSQSGWDK
    N315            WGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQTPVLGRSQSGWDK
    NCTC8325        WGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQTPVLGRSQSGWDK
    Newman          WGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQTPVLGRSQSGWDK
    USA300_FPR3757  WGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQTPVLGRSQSGWDK
                    ************************************************************

    COL             TEGSYSSTVAEDGGVAIVSKYPIKEKIQHVFKSGCGFDNDSNKGFVYTKIEKNGKNVHVI
    N315            TEGSYSSTVAEDGGVAIVSKYPIKEKIQHVFKSGCGFDNDSNKGFVYTKIEKNGKNVHVI
    NCTC8325        TEGSYSSTVAEDGGVAIVSKYPIKEKIQHVFKSGCGFDNDSNKGFVYTKIEKNGKNVHVI
    Newman          TEGSYSSTVAEDGGVAIVSKYPIKEKIQHVFKSGCGFDNDSNKGFVYTKIEKNGKNVHVI
    USA300_FPR3757  TEGSYSSTVAEDGGVAIVSKYPIKEKIQHVFKSGCGFDNDSNKGFVYTKIEKNGKNVHVI
                    ************************************************************

    COL             GTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDM
    N315            GTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDM
    NCTC8325        GTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDM
    Newman          GTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDM
    USA300_FPR3757  GTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDM
                    ************************************************************

    COL             LKNLNVNDVLYAGHNSTWDPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTE
    N315            LKNLNVNDVLYAGHNSTWDPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTE
    NCTC8325        LKNLNVNDVLYAGHNSTWDPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTE
    Newman          LKNLNVNDVLYAGHNSTWDPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTE
    USA300_FPR3757  LKNLNVNDVLYAGHNSTWDPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTE
                    ************************************************************

    COL             KPKPWDVYAFPYYYVYNDFSDHYPIKAYSK
    N315            KPKPWDVYAFPYYYVYNDFSDHYPIKAYSK
    NCTC8325        KPKPWDVYAFPYYYVYNDFSDHYPIKAYSK
    Newman          KPKPWDVYAFPYYYVYNDFSDHYPIKAYSK
    USA300_FPR3757  KPKPWDVYAFPYYYVYNDFSDHYPIKAYSK
                    ******************************