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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

Summary[edit source | edit]

  • pan ID?: SAUPAN005197000
  • symbol?:
  • description?: tetracenomycin polyketide synthesis O-methyltransferase TcmP

      descriptions from strain specific annotations:

    • tetracenomycin polyketide synthesis O-methyltransferase TcmP
    • pseudogene
    • tetracenomycin polyketide synthesis O-methyltransferase, TcmP
  • strand?: -
  • coordinates?: 5363959..5367269
  • synteny block?: BlockID0040290
  • occurrence?: in 34% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    08BA02176:
    11819-97:
    71193:
    ECT-R 2:
    ED133:
    ED98:
    HO 5096 0412:
    SAEMRSA15_19300
    JH1:
    JH9:
    JKD6008:
    SAA6008_02061
    JKD6159:
    LGA251:
    M013:
    MRSA252:
    MSHR1132:
    MSSA476:
    SAS1927
    Mu3:
    Mu50:
    MW2:
    MW1944
    RF122:
    ST398:
    T0131:
    TCH60:
    TW20:
    SATW20_20040
    USA300_TCH1516:
    USA300HOU_2016
    VC40:
    SAVC_08980

Genome Viewer[edit source | edit]

COL chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MKQLVGIPESMLIPLIARAKEYENEKPIIKDALSKKIFDGLDDMYKNVTCDDMSQIGISI
    NCTC8325        MKQLVGIPESMLIPLIARAKEYENEKPIIKDALSKKIFDGLDDMYKNVTCDDMSQIGISI
    Newman          MKQLVGIPESMLIPLIARAKEYENEKPIIKDALSKKIFDGLDDMYKNVTCDDMSQIGISI
    USA300_FPR3757  MKQLVGIPESMLIPLIARAKEYENEKPIIKDALSKKIFDGLDDMYKNVTCDDMSQIGISI
                    ************************************************************

    COL             RTVIIDCVTKRLIKDNKDLIVVNIGCGLDTRFQRFNKEKISWIDLDVPESIEIRKTFFKE
    NCTC8325        RTVIIDCVTKRLIKDNKDLIVVNIGCGLDTRFQRFNKEKISWIDLDVPESIEIRKTFFKE
    Newman          RTVIIDCVTKRLIKDNKDLIVVNIGCGLDTRFQRFNKEKISWIDLDVPESIEIRKTFFKE
    USA300_FPR3757  RTVIIDCVTKRLIKDNKDLIVVNIGCGLDTRFQRFNKEKISWIDLDVPESIEIRKTFFKE
                    ************************************************************

    COL             SNSYKMISKSMLDYSWIDDVKNYKFFNSKSDILFIIEGVLMYFDESVMTQLLDTIIKKMG
    NCTC8325        SNSYKMISKSMLDYSWIDDVKNYKFFNSKSDILFIIEGVLMYFDESVMTQLLDTIIKKMG
    Newman          SNSYKMISKSMLDYSWIDDVKNYKFFNSKSDILFIIEGVLMYFDESVMTQLLDTIIKKMG
    USA300_FPR3757  SNSYKMISKSMLDYSWIDDVKNYKFFNSKSNILFIIEGVLMYFDESVMTQLLDTIIKKMG
                    ******************************:*****************************

    COL             DHNLTFAIEFCSKTIANNTKRHQSVSKLSSQPVFKYGYNDLKKLNEILPNTIRVIHEYNY
    NCTC8325        DHNLTFAIEFCSKTIANNTKRHQSVSKLSSQPVFKYGYNDLKKLNEILPNTIRVIHEYNY
    Newman          DHNLTFAIEFCSKTIANNTKRHQSVSKLSSQPVFKYGYNDLKKLNEILPNTIRVIHEYNY
    USA300_FPR3757  DHNLTFAIEFCSKTIANNTKRHQSVSKLSSQPVFKYGYNDLKKLNEILPNTIRVIHEYNY
                    ************************************************************

    COL             FDYYKNRWGLFGYCRFIPYLKKRLNNKIVLMKYKVPKRQRH
    NCTC8325        FDYYKNRWGLFGYCRFIPYLKKRLNNKIVLMKYKVPKRQRH
    Newman          FDYYKNRWGLFGYCRFIPYLKKRLNNKIVLMKYKVPKRQRH
    USA300_FPR3757  FDYYKNRWGLFGYCRFIPYLKKRLNNKIVLMKYKVPKRQRH
                    *****************************************