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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

Summary[edit source | edit]

  • pan ID?: SAUPAN005239000
  • symbol?:
  • description?: acetyltransferase

      descriptions from strain specific annotations:

    • acetyltransferase
    • GNAT family acetyltransferase
    • acetyltransferase, GNAT family protein
    • acetyltransferase (GNAT) family protein
    • putative GNAT family acetyltransferase
  • strand?: -
  • coordinates?: 5395922..5396347
  • synteny block?: BlockID0040480
  • occurrence?: in 38% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    08BA02176:
    11819-97:
    71193:
    ECT-R 2:
    ED133:
    ED98:
    HO 5096 0412:
    SAEMRSA15_19330
    JH1:
    JH9:
    JKD6008:
    SAA6008_02064
    JKD6159:
    LGA251:
    M013:
    MRSA252:
    MSHR1132:
    MSSA476:
    SAS1930
    Mu3:
    Mu50:
    MW2:
    MW1947
    RF122:
    ST398:
    T0131:
    SAT0131_02149
    TCH60:
    TW20:
    SATW20_20080
    USA300_TCH1516:
    USA300HOU_2019
    VC40:
    SAVC_08995

Genome Viewer[edit source | edit]

COL chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             ---MSIITRLFNNSDFEKLNQLCKLYDDLGYPTNENDLKKRLKKITNHDDYFLLLLIKEN
    NCTC8325        ---MSIITRLFNNSDFEKLNQLCKLYDDLGYPTNENDLKKRLKKITNHDDYFLLLLIKEN
    Newman          MGYMSIITRLFNNSDFEKLNQLCKLYDDLGYPTNENDLKKRLKKITNHDDYFLLLLIKEN
    USA300_FPR3757  ---MSIITRLFNNSDFEKLNQLCKLYDDLGYPTNENDLKKRLKKITNHDDYFLLLLIKEN
                       *********************************************************

    COL             KIIGLSGMCKMMFYEKNAEYMRILAFVIHSEFRKKGYGKRLLADSEEFSKRLNCKAITLN
    NCTC8325        KIIGLSGMCKMMFYEKNAEYMRILAFVIHSEFRKKGYGKRLLADSEEFSKRLNCKAITLN
    Newman          KIIGLSGMCKMMFYEKNAEYMRILAFVIHSEFRKKGYGKRLLADSEEFSKRLNCKAITLN
    USA300_FPR3757  KIIGLSGMCKMMFYEKNAEYMRILAFVIHSEFRKKGYGKRLLADSEEFSKRLNCKAITLN
                    ************************************************************

    COL             SGNRNERLSAHKLYSDNGYVSNTSGFTKQL
    NCTC8325        SGNRNERLSAHKLYSDNGYVSNTSGFTKQL
    Newman          SGNRNERLSAHKLYSDNGYVSNTSGFTKQL
    USA300_FPR3757  SGNRNERLSAHKLYSDNGYVSNTSGFTKQL
                    ******************************