PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005275000
• symbol^?: agrB
• synonym:
• description^?: accessory gene regulator AgrB

  descriptions from strain specific annotations:

  • accessory gene regulator AgrB
  • accessory gene regulator protein B
  • accessory gene regulator B
  • accessory gene regulator B family protein
  • accessory gene regulator protein B AGRB
  • agrB protein
  • putative autoinducer processing protein
  • Regulator protein agrB
• strand^?: +
• coordinates^?: 5442847..5443468
• synteny block^?: BlockID0040760
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL2023 (agrB)
N315:
SA1842 (agrB)
NCTC8325:
SAOUHSC_02261
Newman:
NWMN_1943 (agrB)
USA300_FPR3757:
SAUSA300_1989 (agrB)
04-02981:
SA2981_1977 (agrB)
08BA02176:
C248_2040 (agrB)
11819-97:
MS7_2048 (agrB)
6850:
RSAU_001869 (agrB)
71193:
ST398NM01_2073
ECT-R 2:
ECTR2_1887
ED133:
SAOV_2073
ED98:
SAAV_2084 (agrB)
HO 5096 0412:
SAEMRSA15_19440 (agrB)
JH1:
SaurJH1_2110
JH9:
SaurJH9_2073
JKD6008:
SAA6008_02074 (agrB)
JKD6159:
SAA6159_01949 (agrB)
LGA251:
SARLGA251_18380 (agrB)
M013:
M013TW_1988
MRSA252:
SAR2123 (agrB)
MSHR1132:
SAMSHR1132_18580
MSSA476:
SAS1941
Mu3:
SAHV_2021 (agrB)
Mu50:
SAV2036 (agrB)
MW2:
MW1960 (agrB)
RF122:
SAB1920 (agrB)
ST398:
SAPIG2073
T0131:
SAT0131_02183
TCH60:
HMPREF0772_11163 (agrB)
TW20:
SATW20_20190 (agrB)
USA300_TCH1516:
USA300HOU_2032 (agrB)
VC40:
SAVC_09060

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MNYFDNKIDQFATYLQKRNNLDHIQFLQVRLGMQVLAKNIGKLIVMYTIAYILNIFLFTL
  N315            MNYFDNKIDQFATYLQKRNNLDHIQFLQVRLGMQIIVGNFFKILVTYSISIFLSVFLFTL
  NCTC8325        MNYFDNKIDQFATYLQKRNNLDHIQFLQVRLGMQVLAKNIGKLIVMYTIAYILNIFLFTL
  Newman          MNYFDNKIDQFATYLQKRNNLDHIQFLQVRLGMQVLAKNIGKLIVMYTIAYILNIFLFTL
  USA300_FPR3757  MNYFDNKIDQFATYLQKRNNLDHIQFLQVRLGMQVLAKNIGKLIVMYTIAYILNIFLFTL
                  **********************************::. *: *::* *:*: :*.:*****
  
  COL             ITNLTFYLIRRHAHGAHAPSSFWCYVESIILFILLPLVIVNFHINFLIMIILTVISLGVI
  N315            VTHLSYMLIRYNAHGAHAKSSILCYIQSILTFVFVPYFLINIDINFTYLLALSIIGLISV
  NCTC8325        ITNLTFYLIRRHAHGAHAPSSFWCYVESIILFILLPLVIVNFHINFLIMIILTVISLGVI
  Newman          ITNLTFYLIRRHAHGAHAPSSFWCYVESIILFILLPLVIVNFHINFLIMIILTVISLGVI
  USA300_FPR3757  ITNLTFYLIRRHAHGAHAPSSFWCYVESIILFILLPLVIVNFHINFLIMIILTVISLGVI
                  :*:*:: *** :****** **: **::**: *:::* .::*:.***  :: *::*.*  :
  
  COL             SVYAPAATKKKPIPVRLIKRKKYYAIIVSLTLFIITLIIKEPFAQFIQLGIIIEAITLLP
  N315            VIYAPAATKKQPIPIKLVKRKKYLSIIMYLLVLILSLIIHPFYAQFMLLGILVESITLLP
  NCTC8325        SVYAPAATKKKPIPVRLIKRKKYYAIIVSLTLFIITLIIKEPFAQFIQLGIIIEAITLLP
  Newman          SVYAPAATKKKPIPVRLIKRKKYYAIIVSLTLFIITLIIKEPFAQFIQLGIIIEAITLLP
  USA300_FPR3757  SVYAPAATKKKPIPVRLIKRKKYYAIIVSLTLFIITLIIKEPFAQFIQLGIIIEAITLLP
                   :********:***::*:***** :**: * ::*::***:  :***: ***::*:*****
  
  COL             IFFIKEDLK
  N315            IFFPKED--
  NCTC8325        IFFIKEDLK
  Newman          IFFIKEDLK
  USA300_FPR3757  IFFIKEDLK
                  *** ***