PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005279000
• symbol^?: agrC
• synonym:
• description^?: accessory gene regulator protein C

  descriptions from strain specific annotations:

  • accessory gene regulator protein C
  • ATP-binding protein
  • accessory gene regulator C
  • GHKL domain-containing protein
  • accessory protein regulator protein C
  • Accessory regulator C
  • autoinducer sensor AgrC
  • autoinducer sensor protein
  • histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein
  • Histidine kinase of the competence regulon ComD
  • pseudogene
  • Regulator protein agrC
  • staphylococcal accessory gene regulator protein C
• strand^?: +
• coordinates^?: 5443647..5446662
• synteny block^?: BlockID0040800
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL2025 (argC2)
N315:
SA1843 (agrC)
NCTC8325:
SAOUHSC_02264
Newman:
NWMN_1945 (agrC)
USA300_FPR3757:
SAUSA300_1991 (agrC)
04-02981:
SA2981_1979 (agrC)
08BA02176:
C248_2042 (agrC)
11819-97:
MS7_2049
6850:
RSAU_001871 (agrC)
71193:
ST398NM01_2075
ECT-R 2:
ECTR2_1889
ED133:
SAOV_2075
ED98:
SAAV_2086 (agrC)
HO 5096 0412:
SAEMRSA15_19460 (agrC)
JH1:
SaurJH1_2111
JH9:
SaurJH9_2075
JKD6008:
SAA6008_02076
JKD6159:
SAA6159_01951
LGA251:
SARLGA251_18400 (agrC)
M013:
M013TW_1990
MRSA252:
SAR2125 (agrC)
MSHR1132:
SAMSHR1132_18600
MSSA476:
SAS1943
Mu3:
SAHV_2023 (agrC)
Mu50:
SAV2038 (agrC)
MW2:
MW1962 (agrC)
RF122:
SAB1922 (agrC)
ST398:
SAPIG2075
T0131:
SAT0131_02188
TCH60:
HMPREF0772_11161 (argC2)
TW20:
SATW20_20210 (agrC)
USA300_TCH1516:
USA300HOU_2034 (agrC)
VC40:
SAVC_09070

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MELLNSYNFVLFVLTQMILMFTIPAIISGIKYSKLDYFFIIVISTLSLFLFKMFDSASLI
  N315            -----------------------------------------------------------M
  NCTC8325        ----------------MILMFTIPAIISGIKYSKLDYFFIIVISTLSLFLFKMFDSASLI
  Newman          MELLNSYNFVLFVLTQMILMFTIPAIISGIKYSKLDYFFIIVISTLSLFLFKMFDSASLI
  USA300_FPR3757  ----------------MILMFTIPAIISGIKYSKLDYFFIIVISTLSLFLFKMFDSASLI
                                                                             :
  
  COL             ILTSFIIIMYFVKIKWYSILLIMTSQIILYCANYMYIVIYAYITKISDSIFVIFPSFFVV
  N315            IPTFSSIIFLFFKLKYYAIVTILVTMIIMYLSNFATVGLFLTLRKYTTDPAILLPLYILS
  NCTC8325        ILTSFIIIMYFVKIKWYSILLIMTSQIILYCANYMYIVIYAYITKISDSIFVIFPSFFVV
  Newman          ILTSFIIIMYFVKIKWYSILLIMTSQIILYCANYMYIVIYAYITKISDSIFVIFPSFFVV
  USA300_FPR3757  ILTSFIIIMYFVKIKWYSILLIMTSQIILYCANYMYIVIYAYITKISDSIFVIFPSFFVV
                  * *   **: *.*:*:*:*: *:.: **:* :*:  : ::  : * : .  :::* ::: 
  
  COL             YVTISILFSYIINRVLKKISTPYLILNKGFLIVISTILLLTFSLFFFYSQINSDEAKVIR
  N315            FSSVSLLATYLVRISLKKFKKSYLSLNKTYMIIISFVLFATFAFFYIYSTNTSSNGDSLI
  NCTC8325        YVTISILFSYIINRVLKKISTPYLILNKGFLIVISTILLLTFSLFFFYSQINSDEAKVIR
  Newman          YVTISILFSYIINRVLKKISTPYLILNKGFLIVISTILLLTFSLFFFYSQINSDEAKVIR
  USA300_FPR3757  YVTISILFSYIINRVLKKISTPYLILNKGFLIVISTILLLTFSLFFFYSQINSDEAKVIR
                  : ::*:* :*::.  ***:...** *** ::*:** :*: **::*::**  .*.:.. : 
  
  COL             QYSFIFIGITIFLSILTFVISQFLLKEMKYKRNQEEIETYYEYTLKIEAINNEMRKFRHD
  N315            PYALVFIGLIIFISVVILIMSLFTLKEMKYKRNQEEIETYYEYTLKIEAINNEMRKFRHD
  NCTC8325        QYSFIFIGITIFLSILTFVISQFLLKEMKYKRNQEEIETYYEYTLKIEAINNEMRKFRHD
  Newman          QYSFIFIGITIFLSILTFVISQFLLKEMKYKRNQEEIETYYEYTLKIEAINNEMRKFRHD
  USA300_FPR3757  QYSFIFIGITIFLSILTFVISQFLLKEMKYKRNQEEIETYYEYTLKIEAINNEMRKFRHD
                   *:::***: **:*:: :::* * ************************************
  
  COL             YVNILTPLSEYIREDDMPGLRDYFNKNIVPMKDNLQMNAIKLNGIENLKVREIKGLITAK
  N315            YVNILTTLSEYIREDDMIGLRAYFNKNIVPMKDNLQMNAIKLNGIENLKVREIKGLITAK
  NCTC8325        YVNILTTLSEYIREDDMPGLRDYFNKNIVPMKDNLQMNAIKLNGIENLKVREIKGLITAK
  Newman          YVNILTTLSEYIREDDMPGLRDYFNKNIVPMKDNLQMNAIKLNGIENLKVREIKGLITAK
  USA300_FPR3757  YVNILTTLSEYIREDDMPGLRDYFNKNIVPMKDNLQMNAIKLNGIENLKVREIKGLITAK
                  ******.********** *** **************************************
  
  COL             ILRAQEMNIPISIEIPDEVSSINLNMIDLSRSIGIILDNAIEASTEIDDPIIRVAFIESE
  N315            ILRAQEMNIPISIEIPDEVSSINLNMIDLSRSIGIILDNAIEASTEIDDPIIRVAFIESE
  NCTC8325        ILRAQEMNIPISIEIPDEVSSINLNMIDLSRSIGIILDNAIEASTEIDDPIIRVAFIESE
  Newman          ILRAQEMNIPISIEIPDEVSSINLNMIDLSRSIGIILDNAIEASTEIDDPIIRVAFIESE
  USA300_FPR3757  ILRAQEMNFPISIEIPDEVSSINLNMIDLSRSIGIILDNAIEASTEIDDPIIRVAFIESE
                  ********:***************************************************
  
  COL             NSVTFIVMNKCADDIPRIHELFQESFSTKGEGRGLGLSTLKEIADNADNVLLDTIIENGF
  N315            NSVTFIVMNKCADDIPRIHELFQESFSTKGEGRGLGLSTLKEIADNADNVLLDTIIENGF
  NCTC8325        NSVTFIVMNKCADDIPRIHELFQESFSTKGEGRGLGLSTLKEIADNADNVLLDTIIENGF
  Newman          NSVTFIVMNKCADDIPRIHELFQESFSTKGEGRGLGLSTLKEIADNADNVLLDTIIENGF
  USA300_FPR3757  NSVTFIVMNKCADDIPRIHELFQESFSTKGEGRGLGLSTLKEIADNADNVLLDTIIENGF
                  ************************************************************
  
  COL             FIQKVEIINN
  N315            FIQKVEIINN
  NCTC8325        FIQKVEIINN
  Newman          FIQKVEIINN
  USA300_FPR3757  FIQKVEIINN
                  **********