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Summary[edit source | edit]

  • pan ID?: SAUPAN005306000
  • symbol?: ilvC
  • description?: ketol-acid reductoisomerase

      descriptions from strain specific annotations:

    • ketol-acid reductoisomerase
    • 2-dehydropantoate 2-reductase
  • strand?: +
  • coordinates?: 5467671..5468690
  • synteny block?: BlockID0041060
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL2045 (ilvC)
    N315:
    SA1861 (ilvC)
    NCTC8325:
    Newman:
    NWMN_1962 (ilvC)
    USA300_FPR3757:
    04-02981:
    SA2981_1997 (ilvC)
    08BA02176:
    C248_2062 (ilvC)
    11819-97:
    MS7_2068 (ilvC)
    71193:
    ST398NM01_2095
    ECT-R 2:
    ECTR2_1907 (ilvC)
    ED133:
    SAOV_2093 (ilvC)
    ED98:
    SAAV_2104 (ilvC)
    HO 5096 0412:
    SAEMRSA15_19640 (ilvC)
    JH1:
    SaurJH1_2130
    JH9:
    SaurJH9_2093
    JKD6008:
    SAA6008_02094 (ilvC)
    JKD6159:
    SAA6159_01969 (ilvC)
    LGA251:
    SARLGA251_18590 (ilvC)
    M013:
    M013TW_2009
    MRSA252:
    SAR2143 (ilvC)
    MSHR1132:
    SAMSHR1132_18780
    MSSA476:
    SAS1961
    Mu3:
    SAHV_2041 (ilvC)
    Mu50:
    SAV2056 (ilvC)
    MW2:
    MW1980 (ilvC)
    RF122:
    SAB1941 (ilvC)
    ST398:
    SAPIG2095 (ilvC)
    T0131:
    SAT0131_02209
    TCH60:
    HMPREF0772_11142 (ilvC)
    TW20:
    SATW20_21960 (ilvC)
    USA300_TCH1516:
    USA300HOU_2051 (ilvC)
    VC40:
    SAVC_09160

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MTTVYYDQDVKTDALQGKKIAVVGYGSQGHAHAQNLKDNGYDVVIGIRPGRSFDKAKEDG
    N315            MTTVYYDQDVKTDALQGKKIAVVGYGSQGHAHAQNLKDNGYDVVIGIRPGRSFDKAKEDG
    NCTC8325        MTTVYYDQDVKTDALQGKKIAVVGYGSQGHAHAQNLKDNGYDVVIGIRPGRSFDKAKEDG
    Newman          MTTVYYDQDVKTDALQGKKIAVVGYGSQGHAHAQNLKDNGYDVVIGIRPGRSFDKAKEDG
    USA300_FPR3757  MTTVYYDQDVKTDALQGKKIAVVGYGSQGHAHAQNLKDNGYDVVIGIRPGRSFDKAKEDG
                    ************************************************************

    COL             FDVFPVAEAVKQADVIMVLLPDEIQGDVYKNEIEPNLEKHNALAFAHGFNIHFGVIQPPA
    N315            FDVFPVAEAVKQADVIMVLLPDEIQGDVYKNEIEPNLEKHNALAFAHGFNIHFGVIQPPA
    NCTC8325        FDVFPVAEAVKQADVIMVLLPDEIQGDVYKNEIEPNLEKHNALAFAHGFNIHFGVIQPPA
    Newman          FDVFPVAEAVKQADVIMVLLPDEIQGDVYKNEIEPNLEKHNALAFAHGFNIHFGVIQPPA
    USA300_FPR3757  FDVFPVAEAVKQADVIMVLLPDEIQGDVYKNEIEPNLEKHNALAFAHGFNIHFGVIQPPA
                    ************************************************************

    COL             DVDVFLVAPKGPGHLVRRTFVEGSAVPSLFGIQQGASGQARNIALSYAKGIGATRAGVIE
    N315            DVDVFLVAPKGPGHLVRRTFVEGSAVPSLFGIQQDASGQARNIALSYAKGIGATRAGVIE
    NCTC8325        DVDVFLVAPKGPGHLVRRTFVEGSAVPSLFGIQQGASGQARNIALSYAKGIGATRAGVIE
    Newman          DVDVFLVAPKGPGHLVRRTFVEGSAVPSLFGIQQGASGQARNIALSYAKGIGATRAGVIE
    USA300_FPR3757  DVDVFLVAPKGPGHLVRRTFVEGSAVPSLFGIQQGASGQARNIALSYAKGIGATRAGVIE
                    **********************************.*************************

    COL             TTFKEETETDLFGEQAVLCGGVSKLIQSGFETLVEAGYQPELAYFEVLHEMKLIVDLMYE
    N315            TTFKEETETDLFGEQAVLCGGVSKLIQSGFETLVEAGYQPELAYFEVLHEMKLIVDLMYE
    NCTC8325        TTFKEETETDLFGEQAVLCGGVSKLIQSGFETLVEAGYQPELAYFEVLHEMKLIVDLMYE
    Newman          TTFKEETETDLFGEQAVLCGGVSKLIQSGFETLVEAGYQPELAYFEVLHEMKLIVDLMYE
    USA300_FPR3757  TTFKEETETDLFGEQAVLCGGVSKLIQSGFETLVEAGYQPELAYFEVLHEMKLIVDLMYE
                    ************************************************************

    COL             GGMENVRYSISNTAEFGDYVSGPRVITPDVKENMKAVLTDIQNGNFSNRFIEDNKNGFKE
    N315            GGMENVRYSISNTAEFGDYVSGPRVITPDVKENMKAVLTDIQNGNFSNRFIEDNKNGFKE
    NCTC8325        GGMENVRYSISNTAEFGDYVSGPRVITPDVKENMKAVLTDIQNGNFSNRFIEDNKNGFKE
    Newman          GGMENVRYSISNTAEFGDYVSGPRVITPDVKENMKAVLTDIQNGNFSNRFIEDNKNGFKE
    USA300_FPR3757  GGMENVRYSISNTAEFGDYVSGPRVITPDVKENMKAVLTDIQNGNFSNRFIEDNKNGFKE
                    ************************************************************

    COL             FYKLREEQHGHQIEKVGRELREMMPFIKSKSIEK
    N315            FYKLREEQHGHQIEKVGRELREMMPFIKSKSIEK
    NCTC8325        FYKLREEQHGHQIEKVGRELREMMPFIKSKSIEK
    Newman          FYKLREEQHGHQIEKVGRELREMMPFIKSKSIEK
    USA300_FPR3757  FYKLREEQHGHQIEKVGRELREMMPFIKSKSIEK
                    **********************************