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Summary[edit source | edit]

  • pan ID?: SAUPAN005307000
  • symbol?: leuA
  • description?: 2-isopropylmalate synthase
  • strand?: +
  • coordinates?: 5468711..5470249
  • synteny block?: BlockID0041070
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL2046 (leuA)
    N315:
    SA1862 (leuA)
    NCTC8325:
    Newman:
    NWMN_1963 (leuA)
    USA300_FPR3757:
    04-02981:
    SA2981_1998 (leuA)
    08BA02176:
    C248_2063 (leuA)
    11819-97:
    MS7_2069 (leuA)
    71193:
    ST398NM01_2096
    ECT-R 2:
    ECTR2_1908 (leuA)
    ED133:
    SAOV_2094 (leuA)
    ED98:
    SAAV_2105 (leuA)
    HO 5096 0412:
    SAEMRSA15_19650 (leuA)
    JH1:
    SaurJH1_2131
    JH9:
    SaurJH9_2094
    JKD6008:
    SAA6008_02095 (leuA)
    JKD6159:
    SAA6159_01970 (leuA)
    LGA251:
    SARLGA251_18600 (leuA)
    M013:
    M013TW_2010
    MRSA252:
    SAR2144 (leuA)
    MSHR1132:
    SAMSHR1132_18790
    MSSA476:
    SAS1962
    Mu3:
    SAHV_2042 (leuA)
    Mu50:
    SAV2057 (leuA)
    MW2:
    MW1981 (leuA)
    RF122:
    SAB1942 (leuA)
    ST398:
    SAPIG2096 (leuA)
    T0131:
    SAT0131_02210
    TCH60:
    HMPREF0772_11141 (leuA)
    TW20:
    SATW20_21970 (leuA)
    USA300_TCH1516:
    USA300HOU_2052 (leuA2)
    VC40:
    SAVC_09165

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MSSHIQIFDTTLRDGEQTPGVNFTFDERLRIALQLEKWGVDVIEAGFPASSTGSFKSVQA
    N315            MSSHIQIFDTTLRDGEQTPGVNFTFDERLRIALQLEKWGVDVIEAGFPASSTGSFKSVQA
    NCTC8325        MSSHIQIFDTTLRDGEQTPGVNFTFDERLRIALQLEKWGVDVIEAGFPASSTGSFKSVQA
    Newman          MSSHIQIFDTTLRDGEQTPGVNFTFDERLRIALQLEKWGVDVIEAGFPASSTGSFKSVQA
    USA300_FPR3757  MSSHIQIFDTTLRDGEQTPGVNFTFDERLRIALQLEKWGVDVIEAGFPASSTGSFKSVQA
                    ************************************************************

    COL             IAQTLTTTAVCGLARCKKSDIDAVYEATKDAAKPVVHVFIATSPIHLEHKLKMSQEDVLA
    N315            IAQTLTTTAVCGLARCKKSDIDAVYEATKDAAKPVVHVFIATSPIHLEHKLKMSQEDVLA
    NCTC8325        IAQTLTTTAVCGLARCKKSDIDAVYEATKDAAKPVVHVFIATSPIHLEHKLKMSQEDVLA
    Newman          IAQTLTTTAVCGLARCKKSDIDAVYEATKDAAKPVVHVFIATSPIHLEHKLKMSQEDVLA
    USA300_FPR3757  IAQTLTTTAVCGLARCKKSDIDAVYEATKDAAKPVVHVFIATSPIHLEHKLKMSQEDVLA
                    ************************************************************

    COL             SIKEHVTYAKQLFDVVQFSPEDATRTELPFLVKCVQTAVDAGATVINIPDTVGYSYHDEY
    N315            SIKEHVTYAKQLFDVVQFSPEDATRTELPFLVKCVQTAVDAGATVINIPDTVGYSYHDEY
    NCTC8325        SIKEHVTYAKQLFDVVQFSPEDATRTELPFLVKCVQTAVDAGATVINIPDTVGYSYHDEY
    Newman          SIKEHVTYAKQLFDVVQFSPEDATRTELPFLVKCVQTAVDAGATVINIPDTVGYSYHDEY
    USA300_FPR3757  SIKEHVTYAKQLFDVVQFSPEDATRTELPFLVKCVQTAVDAGATVINIPDTVGYSYHDEY
                    ************************************************************

    COL             AHIFKTLTESVTSSNEIIYSAHCHDDLGMAVSNSLAAIEGGARRIEGTVNGIGERAGNAA
    N315            AHIFKTLTESVTSSNEIIYSAHCHDDLGMAVSNSLAAIEGGARRIEGTVNGIGERAGNAA
    NCTC8325        AHIFKTLTESVTSSNEIIYSAHCHDDLGMAVSNSLAAIEGGARRIEGTVNGIGERAGNAA
    Newman          AHIFKTLTESVTSSNEIIYSAHCHDDLGMAVSNSLAAIEGGARRIEGTVNGIGERAGNAA
    USA300_FPR3757  AHIFKTLTESVTSSNEIIYSAHCHDDLGMAVSNSLAAIEGGARRIEGTVNGIGERAGNAA
                    ************************************************************

    COL             LEEVALALYVRNDHYGAQTALNLEETKKTSDLISRYAGIRVPRNKAIVGQNAFSHESGIH
    N315            LEEVALALYVRNDHYGAQTALNLEETKKTSDLISRYAGIRVPRNKAIVGQNAFSHESGIH
    NCTC8325        LEEVALALYVRNDHYGAQTALNLEETKKTSDLISRYAGIRVPRNKAIVGQNAFSHESGIH
    Newman          LEEVALALYVRNDHYGAQTALNLEETKKTSDLISRYAGIRVPRNKAIVGQNAFSHESGIH
    USA300_FPR3757  LEEVALALYVRNDHYGAQTALNLEETKKTSDLISRYAGIRVPRNKAIVGQNAFSHESGIH
                    ************************************************************

    COL             QDGVLKHRETYEIMTPQLVGVSTTELPLGKLSGKHAFSEKLKALGYDIDKEAQIDLFKQF
    N315            QDGVLKHRETYEIMTPQLVGVSTTELPLGKLSGKHAFSEKLKALGYNIDKEAQIDLFKQF
    NCTC8325        QDGVLKHRETYEIMTPQLVGVSTTELPLGKLSGKHAFSEKLKALGYDIDKEAQIDLFKQF
    Newman          QDGVLKHRETYEIMTPQLVGVSTTELPLGKLSGKHAFSEKLKALGYDIDKEAQIDLFKQF
    USA300_FPR3757  QDGVLKHRETYEIMTPQLVGVSTTELPLGKLSGKHAFSEKLKALGYDIDKEAQIDLFKQF
                    **********************************************:*************

    COL             KAIADKKKSVSDRDIHAIIQGSEHEHQALYKLETLQLQYVSSGLQSAVVVVKDKEGHIYQ
    N315            KTIADKKKSVSDRDIHAIIQGSEHEHQALYKLETLQLQYVSSGLQSAVVVVKDKEGHIYQ
    NCTC8325        KAIADKKKSVSDRDIHAIIQGSEHEHQALYKLETLQLQYVSSGLQSAVVVVKDKEGHIYQ
    Newman          KAIADKKKSVSDRDIHAIIQGSEHEHQALYKLETLQLQYVSSGLQSAVVVVKDKEGHIYQ
    USA300_FPR3757  KAIADKKKSVSDRDIHAIIQGSEHEHQALYKLETLQLQYVSSGLQSAVVVVKDKEGHIYQ
                    *:**********************************************************

    COL             DSSIGTGSIVAIYNAVDRIFQKETELIDYRINSVTEGTDAQAEVHVNLLIEGKTVNGFGI
    N315            DSSIGTGSIVAIYNAVDRIFQKETELIDYRINSVTEGTDAQAEVHVNLLIEGKTVNGFGI
    NCTC8325        DSSIGTGSIVAIYNAVDRIFQKETELIDYRINSVTEGTDAQAEVHVNLLIEGKTVNGFGI
    Newman          DSSIGTGSIVAIYNAVDRIFQKETELIDYRINSVTEGTDAQAEVHVNLLIEGKTVNGFGI
    USA300_FPR3757  DSSIGTGSIVAIYNAVDRIFQKETELIDYRINSVTEGTDAQAEVHVNLLIEGKTVNGFGI
                    ************************************************************

    COL             DHDILQASCKAYVEAHAKFAAENVEKVGN
    N315            DHDILQASCKAYVEAHAKFAAENVEKVGN
    NCTC8325        DHDILQASCKAYVEAHAKFAAENVEKVGN
    Newman          DHDILQASCKAYVEAHAKFAAENVEKVGN
    USA300_FPR3757  DHDILQASCKAYVEAHAKFAAENVEKVGN
                    *****************************