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Summary[edit source | edit]

  • pan ID?: SAUPAN005308000
  • symbol?: leuB
  • description?: 3-isopropylmalate dehydrogenase
  • strand?: +
  • coordinates?: 5470252..5471298
  • synteny block?: BlockID0041080
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL2047 (leuB)
    N315:
    SA1863 (leuB)
    NCTC8325:
    Newman:
    NWMN_1964 (leuB)
    USA300_FPR3757:
    04-02981:
    SA2981_1999 (leuB)
    08BA02176:
    C248_2064 (leuB)
    11819-97:
    MS7_2070 (leuB)
    71193:
    ST398NM01_2097
    ECT-R 2:
    ECTR2_1909 (leuB)
    ED133:
    SAOV_2095 (leuB)
    ED98:
    SAAV_2106 (leuB)
    HO 5096 0412:
    SAEMRSA15_19660 (leuB)
    JH1:
    SaurJH1_2132
    JH9:
    SaurJH9_2095
    JKD6008:
    SAA6008_02096 (leuB)
    JKD6159:
    SAA6159_01971 (leuB)
    LGA251:
    SARLGA251_18610 (leuB)
    M013:
    M013TW_2011
    MRSA252:
    SAR2145 (leuB)
    MSHR1132:
    SAMSHR1132_18800
    MSSA476:
    SAS1963
    Mu3:
    SAHV_2043 (leuB)
    Mu50:
    SAV2058 (leuB)
    MW2:
    MW1982 (leuB)
    RF122:
    SAB1943 (leuB)
    ST398:
    SAPIG2097 (leuB)
    T0131:
    SAT0131_02211
    TCH60:
    HMPREF0772_11140 (leuB)
    TW20:
    SATW20_21980 (leuB)
    USA300_TCH1516:
    USA300HOU_2053 (leuB)
    VC40:
    SAVC_09170

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MTYNIVALPGDGIGPEILNGSLSLLEIISNKYNFNYQIEHHEFGGASIDTFGEPLTEKTL
    N315            MTYNIVALPGDGIGPEILNGSLSLLEIISNKYNFNYQIEHHEFGGASIDTFGEPLTEKTL
    NCTC8325        MTYNIVALPGDGIGPEILNGSLSLLEIISNKYNFNYQIEHHEFGGASIDTFGEPLTEKTL
    Newman          MTYNIVALPGDGIGPEILNGSLSLLEIISNKYNFNYQIEHHEFGGASIDTFGEPLTEKTL
    USA300_FPR3757  MTYNIVALPGDGIGPEILNGSLSLLEIISNKYNFNYQIEHHEFGGASIDTFGEPLTEKTL
                    ************************************************************

    COL             NACKRADAILLGAIGGPKWTDPNNRPEQGLLKLRKSLNLFVNIRPTTVVKGASSLSPLKE
    N315            NACKRADAILLGAIGGPKWTDPNNRPEQGLLKLRKSLNLFANIRPTTVVKGASSLSPLKE
    NCTC8325        NACKRADAILLGAIGGPKWTDPNNRPEQGLLKLRKSLNLFVNIRPTTVVKGASSLSPLKE
    Newman          NACKRADAILLGAIGGPKWTDPNNRPEQGLLKLRKSLNLFVNIRPTTVVKGASSLSPLKE
    USA300_FPR3757  NACKRADAILLGAIGGPKWTDPNNRPEQGLLKLRKSLNLFVNIRPTTVVKGASSLSPLKE
                    ****************************************.*******************

    COL             ERVEGTDLVIVRELTSGIYFGEPRHFNNHEALDSLTYTREEIERIVHVAFKLAASRRGKL
    N315            ERVEGTDLVIVRELTSGIYFGEPRHFNNHEALDSLTYTREEIERIVHVAFKLAASRRGKL
    NCTC8325        ERVEGTDLVIVRELTSGIYFGEPRHFNNHEALDSLTYTREEIERIVHVAFKLAASRRGKL
    Newman          ERVEGTDLVIVRELTSGIYFGEPRHFNNHEALDSLTYTREEIERIVHVAFKLAASRRGKL
    USA300_FPR3757  ERVEGTDLVIVRELTSGIYFGEPRHFNNHEALDSLTYTREEIERIVHVAFKLAASRRGKL
                    ************************************************************

    COL             TSVDKENVLASSKLWRKVVNEVSQLYPEVTVNHLLVDACSMHLITNPKQFDVIVCENLFG
    N315            TSVDKENVLASSKLWRKVVNEVSQLYPEVTVNHLLVDACSMHLITNPKQFDVIVCENLFG
    NCTC8325        TSVDKENVLASSKLWRKVVNEVSQLYPEVTVNHLFVDACSMHLITNPKQFDVIVCENLFG
    Newman          TSVDKENVLASSKLWRKVVNEVSQLYPEVTVNHLLVDACSMHLITNPKQFDVIVCENLFG
    USA300_FPR3757  TSVDKENVLASSKLWRKVVNEVSQLYPEVTVNHLLVDACSMHLITNPKQFDVIVCENLFG
                    **********************************:*************************

    COL             DILSDEASVIPGSLGLSPSASFSNDGPRLYEPIHGSAPDIAGKNVANPFGMILSLAMCLR
    N315            DILSDEASVIPGSLGLSPSASFSNDGPRLYEPIHGSAPDIAGKNVANPFGMILSLAMCLR
    NCTC8325        DILSDEASVIPGSLGLSPSASFSNDGPRLYEPIHGSAPDIAGKNVANPFGMILSLAMCLR
    Newman          DILSDEASVIPGSLGLSPSASFSNDGPRLYEPIHGSAPDIAGKNVANPFGMILSLAMCLR
    USA300_FPR3757  DILSDEASVIPGSLGLSPSASFSNDGPRLYEPIHGSAPDIAGKNVANPFGMILSLAMCLR
                    ************************************************************

    COL             ESLNQPDAADELEQHIYSMIEHGQTTADLGGKLNTTDIFEILSQKLNH
    N315            ESLNQPDAADELEQHIYNMIEHGQTTADLGGKLNTTDIFEILSQKLNH
    NCTC8325        ESLNQPDAADELEQHIYSMIEHGQTTADLGGKLNTTDIFEILSQKLNH
    Newman          ESLNQPDAADELEQHIYSMIEHGQTTADLGGKLNTTDIFEILSQKLNH
    USA300_FPR3757  ESLNQPDAADELEQHIYSMIEHGQTTADLGGKLNTTDIFEILSQKLNH
                    *****************.******************************