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Summary[edit source | edit]

  • pan ID?: SAUPAN005343000
  • symbol?:
  • description?: membrane-flanked domain-containing protein

      descriptions from strain specific annotations:

    • membrane-flanked domain-containing protein
    • membrane flanked domain protein
    • membrane protein
    • probable membrane protein
    • membrane spanning protein
  • strand?: -
  • coordinates?: 5517218..5517703
  • synteny block?: BlockID0041400
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_2013 (ydbS)
    08BA02176:
    C248_2084
    11819-97:
    MS7_2089
    71193:
    ST398NM01_2113
    ECT-R 2:
    ECTR2_1928
    ED133:
    SAOV_2114c
    ED98:
    SAAV_2125
    HO 5096 0412:
    SAEMRSA15_19820
    JH1:
    SaurJH1_2147
    JH9:
    SaurJH9_2109
    JKD6008:
    SAA6008_02111
    JKD6159:
    SAA6159_01987
    LGA251:
    SARLGA251_18750
    M013:
    M013TW_2031
    MRSA252:
    SAR2160
    MSHR1132:
    SAMSHR1132_18970
    MSSA476:
    SAS1977
    Mu3:
    SAHV_2057
    Mu50:
    SAV2072
    MW2:
    MW1996
    RF122:
    SAB1957c
    ST398:
    SAPIG2113
    T0131:
    SAT0131_02229
    TCH60:
    HMPREF0772_11123
    TW20:
    SATW20_22120
    USA300_TCH1516:
    USA300HOU_2067
    VC40:
    SAVC_09245

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MMRDYNFMSPHAKKVMRLSAVLFWIPIALVLLIAFNILNWLFWEILDNHLSIVSSVIIIL
    N315            -MRDYNFMSPHAKKVMRLSAVLFWIPIALVLLIAFNILNWLFWEILDNNISIVSSVIIIL
    NCTC8325        -MRDYNFMSPHAKKVMRLSAVLFWIPIALVLLIAFNILNWLFWEILDNHLSIVSSVIIIL
    Newman          -MRDYNFMSPHAKKVMRLSAVLFWIPIALVLLIAFNILNWLFWEILDNHLSIVSSVIIIL
    USA300_FPR3757  -MRDYNFMSPHAKKVMRLSAVLFWIPIALVLLIAFNILNWLFWEILDNHLSIVSSVIIIL
                     ***********************************************::**********

    COL             LVAVFTLVIAPVYRYKHCRYAFEKHHLRVRNGILFLDEKVIPYFRIQNIDIDVGPIMRRY
    N315            LVAVFTLVIAPVYRYKHCRYAFEKHHLRVRNGILFLDEKVIPYFRIQNIDIDVGPIMRRY
    NCTC8325        LVAVFTLVIAPVYRYKHCRYAFEKHHLRVRNGILFLDEKVIPYFRIQNIDIDVGPIMRRY
    Newman          LVAVFTLVIAPVYRYKHCRYAFEKHHLRVRNGILFLDEKVIPYFRIQNIDIDVGPIMRRY
    USA300_FPR3757  LVAVFTLVIAPVYRYKHCRYAFEKHHLRVRNGILFLDEKVIPYFRIQNIDIDVGPIMRRY
                    ************************************************************

    COL             RLATLTLYTAGGQAEIELIDRSEARRLKRWLNNERHLENNKNEE
    N315            RLATLTLYTAGGQAEIELIDRSEARRLKRWLNNERHLENNKNEE
    NCTC8325        RLATLTLYTAGGQAEIELIDRSEARRLKRWLNNERHLENNKNEE
    Newman          RLATLTLYTAGGQAEIELIDRSEARRLKRWLNNERHLENNKNEE
    USA300_FPR3757  RLATLTLYTAGGQAEIELIDRSEARRLKRWLNNERHLENNKNEE
                    ********************************************