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Summary[edit source | edit]

  • pan ID?: SAUPAN005404000
  • symbol?: glyA
  • description?: serine hydroxymethyltransferase

      descriptions from strain specific annotations:

    • serine hydroxymethyltransferase
    • serine hydroxymethyltransferase (Serine methylase)(SHMT)
    • glycine hydroxymethyltransferase
  • strand?: -
  • coordinates?: 5564499..5565737
  • synteny block?: BlockID0042000
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL2105 (glyA)
    N315:
    SA1915 (glyA)
    NCTC8325:
    Newman:
    NWMN_2017 (glyA)
    USA300_FPR3757:
    04-02981:
    SA2981_2053 (glyA)
    08BA02176:
    C248_2127 (glyA)
    11819-97:
    MS7_2129 (glyA)
    71193:
    ST398NM01_2155
    ECT-R 2:
    ECTR2_1969
    ED133:
    SAOV_2154c
    ED98:
    SAAV_2168 (glyA)
    HO 5096 0412:
    SAEMRSA15_20210 (glyA)
    JH1:
    SaurJH1_2187 (glyA)
    JH9:
    SaurJH9_2149 (glyA)
    JKD6008:
    SAA6008_02151 (glyA)
    JKD6159:
    SAA6159_02027 (glyA)
    LGA251:
    SARLGA251_19140 (glyA)
    M013:
    M013TW_2072
    MRSA252:
    SAR2201 (glyA)
    MSHR1132:
    SAMSHR1132_19360
    MSSA476:
    SAS2016 (glyA)
    Mu3:
    SAHV_2097 (glyA)
    Mu50:
    SAV2113 (glyA)
    MW2:
    MW2037 (glyA)
    RF122:
    SAB1997c (glyA)
    ST398:
    SAPIG2155 (glyA)
    T0131:
    SAT0131_02275
    TCH60:
    HMPREF0772_11078 (glyA)
    TW20:
    SATW20_22510 (glyA)
    USA300_TCH1516:
    USA300HOU_2103 (glyA)
    VC40:
    SAVC_09440 (glyA)

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MSYITKQDKVIAEAIEREFQRQNSNIELIASENFVSEAVMEAQGSVLTNKYAEGYPGRRY
    N315            MSYITKQDKVIAEAIEREFQRQNSNIELIASENFVSEAVMEAQGSVLTNKYAEGYPGRRY
    NCTC8325        MSYITKQDKVIAEAIEREFQRQNSNIELIASENFVSEAVMEAQGSVLTNKYAEGYPGRRY
    Newman          MSYITKQDKVIAEAIEREFQRQNSNIELIASENFVSEAVMEAQGSVLTNKYAEGYPGRRY
    USA300_FPR3757  MSYITKQDKVIAEAIEREFQRQNSNIELIASENFVSEAVMEAQGSVLTNKYAEGYPGRRY
                    ************************************************************

    COL             YGGCEFVDVTESIAIDRAKALFGAEHVNVQPHSGSQANMAVYLVALEMGDTVLGMNLSHG
    N315            YGGCEFVDVTESIAIDRAKALFGAEHVNVQPHSGSQANMAVYLVALEMGDTVLGMNLSHG
    NCTC8325        YGGCEFVDVTESIAIDRAKALFGAEHVNVQPHSGSQANMAVYLVALEMGDTVLGMNLSHG
    Newman          YGGCEFVDVTESIAIDRAKALFGAEHVNVQPHSGSQANMAVYLVALEMGDTVLGMNLSHG
    USA300_FPR3757  YGGCEFVDVTESIAIDRAKALFGAEHVNVQPHSGSQANMAVYLVALGMGDTVLGMNLSHG
                    ********************************************** *************

    COL             GHLTHGAPVNFSGKFYNFVEYGVDKDTERINYDEVRKLALEHKPKLIVAGASAYSRTIDF
    N315            GHLTHGAPVNFSGKFYNFVEYGVDKDTERINYDEVRKLALEHKPKLIVAGASAYSRTIDF
    NCTC8325        GHLTHGAPVNFSGKFYNFVEYGVDKDTERINYDEVRKLALEHKPKLIVAGASAYSRTIDF
    Newman          GHLTHGAPVNFSGKFYNFVEYGVDKDTERINYDEVRKLALEHKPKLIVAGASAYSRTIDF
    USA300_FPR3757  GHLTHGAPVNFSGKFYNFVEYGVDKDTERINYDEVRKLALEHKPKLIVAGASAYSRTIDF
                    ************************************************************

    COL             KKFKEIADEVNAKLMVDMAHIAGLVAAGLHPNPVEYADFVTTTTHKTLRGPRGGMILCKE
    N315            KKFKEIADEVNAKLMVDMAHIAGLVAAGLHPNPVEYADFVTTTTHKTLRGPRGGMILCKE
    NCTC8325        KKFKEIADEVNAKLMVDMAHIAGLVAAGLHPNPVEYADFVTTTTHKTLRGPRGGMILCKE
    Newman          KKFKEIADEVNAKLMVDMAHIAGLVAAGLHPNPVEYADFVTTTTHKTLRGPRGGMILCKE
    USA300_FPR3757  KKFKEIADEVNAKLMVDMAHIAGLVAAGLHPNPVEYADFVTTTTHKTLRGPRGGMILCKE
                    ************************************************************

    COL             EYKKDIDKTIFPGIQGGPLEHVIAAKAVAFGEALENNFKTYQQQVVKNAKVLAEALINEG
    N315            EYKKDIDKTIFPGIQGGPLEHVIAAKAVAFGEALENNFKTYQQQVVKNAKVLAEALINEG
    NCTC8325        EYKKDIDKTIFPGIQGGPLEHVIAAKAVAFGEALENNFKTYQQQVVKNAKVLAEALINEG
    Newman          EYKKDIDKTIFPGIQGGPLEHVIAAKAVAFGEALENNFKTYQQQVVKNAKVLAEALINEG
    USA300_FPR3757  EYKKDIDKTIFPGIQGGPLEHVIAAKAVAFGEALENNFKTYQQQVVKNAKVLAEALINEG
                    ************************************************************

    COL             FRIVSGGTDNHLVAVDVKGSIGLTGKEAEETLDSVGITCNKNTIPFDQEKPFVTSGIRLG
    N315            FRIVSGGTDNHLVAVDVKGSIGLTGKEAEETLDSVGITCNKNTIPFDQEKPFVTSGIRLG
    NCTC8325        FRIVSGGTDNHLVAVDVKGSIGLTGKEAEETLDSVGITCNKNTIPFDQEKPFVTSGIRLG
    Newman          FRIVSGGTDNHLVAVDVKGSIGLTGKEAEETLDSVGITCNKNTIPFDQEKPFVTSGIRLG
    USA300_FPR3757  FRIVSGGTDNHLVAVDVKGSIGLTGKEAEETLDSVGITCNKNTIPFDQEKPFVTSGIRLG
                    ************************************************************

    COL             TPAATTRGFDEKAFEEVAKIISLALKNSKDEEKLQQAKERVAKLTAEYPLYQ
    N315            TPAATTRGFDEKAFEEVAKIISLALKNSKDEEKLQQAKERVAKLTAEYPLYQ
    NCTC8325        TPAATTRGFDEKAFEEVAKIISLALKNSKDEEKLQQAKERVAKLTAEYPLYQ
    Newman          TPAATTRGFDEKAFEEVAKIISLALKNSKDEEKLQQAKERVAKLTAEYPLYQ
    USA300_FPR3757  TPAATTRGFDEKAFEEVAKIISLALKNSKDEEKLQQAKERVAKLTAEYPLYQ
                    ****************************************************