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Summary[edit source | edit]

  • pan ID?: SAUPAN005588000
  • symbol?: lacD
  • description?: tagatose 1,6-diphosphate aldolase

      descriptions from strain specific annotations:

    • tagatose 1,6-diphosphate aldolase
    • tagatose-bisphosphate aldolase
  • strand?: -
  • coordinates?: 5729286..5730266
  • synteny block?: BlockID0043480
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL2183 (lacD)
    N315:
    SA1994 (lacD)
    NCTC8325:
    Newman:
    NWMN_2096 (lacD)
    USA300_FPR3757:
    04-02981:
    SA2981_2130 (lacD)
    08BA02176:
    C248_2230 (lacD)
    11819-97:
    MS7_2215 (lacD)
    71193:
    ST398NM01_2252
    ECT-R 2:
    ECTR2_2053 (lacD)
    ED133:
    SAOV_2239c
    ED98:
    SAAV_2253 (lacD)
    HO 5096 0412:
    SAEMRSA15_20970 (lacD)
    JH1:
    SaurJH1_2262
    JH9:
    SaurJH9_2223
    JKD6008:
    SAA6008_02233 (lacD)
    JKD6159:
    SAA6159_02103 (lacD)
    LGA251:
    SARLGA251_19870 (lacD)
    M013:
    M013TW_2158
    MRSA252:
    SAR2283 (lacD)
    MSHR1132:
    SAMSHR1132_20240
    MSSA476:
    SAS2093
    Mu3:
    SAHV_2176 (lacD)
    Mu50:
    SAV2192 (lacD)
    MW2:
    MW2118 (lacD)
    RF122:
    SAB2073c (lacD)
    ST398:
    SAPIG2252 (lacD)
    T0131:
    SAT0131_02366
    TCH60:
    HMPREF0772_10999 (lacD)
    TW20:
    SATW20_23300 (lacD)
    USA300_TCH1516:
    USA300HOU_2185 (lacD)
    VC40:
    SAVC_09850 (lacD)

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MSKSNQKIASIEQLSNNEGIISALAFDQRGALKRMMAKHQTEEPTVAQIEQLKVLVAEEL
    N315            MSKSNQKIASIEQLSNNEGIISALAFDQRGALKRMMAKHQTEEPTVAQIEQLKVLVAEEL
    NCTC8325        MSKSNQKIASIEQLSNNEGIISALAFDQRGALKRMMAKHQTEEPTVAQIEQLKVLVAEEL
    Newman          MSKSNQKIASIEQLSNNEGIISALAFDQRGALKRMMAKHQTEEPTVAQIEQLKVLVAEEL
    USA300_FPR3757  MSKSNQKIASIEQLSNNEGIISALAFDQRGALKRMMAKHQTEEPTVAQIEQLKVLVAEEL
                    ************************************************************

    COL             TQYASSILLDPEYGLPASDARNKDCGLLLAYEKTGYDVNAKGRLPDCLVEWSAKRLKEQG
    N315            TQYASSILLDPEYGLPASDARNKDCGLLLAYEKTGYDVNAKGRLPDCLVEWSAKRLKEQG
    NCTC8325        TQYASSILLDPEYGLPASDARNKDCGLLLAYEKTGYDVNAKGRLPDCLVEWSAKRLKEQG
    Newman          TQYASSILLDPEYGLPASDARNKDCGLLLAYEKTGYDVNAKGRLPDCLVEWSAKRLKEQG
    USA300_FPR3757  TQYASSILLDPEYGLPASDARNKDCGLLLAYEKTGYDVNAKGRLPDCLVEWSAKRLKEQG
                    ************************************************************

    COL             ANAVKFLLYYDVDDAEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDNIPDNGSVEFA
    N315            ANAVKFLLYYDVDDAEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDNIPDNGSVEFA
    NCTC8325        ANAVKFLLYYDVDDAEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDNIPDNGSVEFA
    Newman          ANAVKFLLYYDVDDAEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDNIPDNGSVEFA
    USA300_FPR3757  ANAVKFLLYYDVDDAEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDNIPDNGSVEFA
                    ************************************************************

    COL             KVKPRKVNEAMKLFSEPRFNVDVLKVEVPVNMKYVEGFAEGEVVYTKEEAAQHFKDQDAA
    N315            KVKPRKVNEAMKLFSEPRFNVDVLKVEVPVNMKYVEGFAEGEVVYTKEEAAQHFKDQDAA
    NCTC8325        KVKPRKVNEAMKLFSEPRFNVDVLKVEVPVNMKYVEGFAEGEVVYTKEEAAQHFKDQDAA
    Newman          KVKPRKVNEAMKLFSEPRFNVDVLKVEVPVNMKYVEGFAEGEVVYTKEEAAQHFKDQDAA
    USA300_FPR3757  KVKPRKVNEAMKLFSEPRFNVDVLKVEVPVNMKYVEGFAEGEVVYTKEEAAQHFKDQDAA
                    ************************************************************

    COL             THLPYIYLSAGVSAELFQETLKFAHEAGAKFNGVLCGRATWSGAVQVYIEQGEDAAREWL
    N315            THLPYIYLSAGVSAELFQETLKFAHEAGAKFNGVLCGRATWSGAVQVYIEQGEDAAREWL
    NCTC8325        THLPYIYLSAGVSAELFQETLKFAHEAGAKFNGVLCGRATWSGAVQVYIEQGEDAAREWL
    Newman          THLPYIYLSAGVSAELFQETLKFAHEAGAKFNGVLCGRATWSGAVQVYIEQGEDAAREWL
    USA300_FPR3757  THLPYIYLSAGVSAELFQETLKFAHEAGAKFNGVLCGRATWSGAVQVYIEQGEDAAREWL
                    ************************************************************

    COL             RTTGFKNIDDLNKVLKDTATSWKQRK
    N315            RTTGFKNIDDLNKVLKDTATSWKQRK
    NCTC8325        RTTGFKNIDDLNKVLKDTATSWKQRK
    Newman          RTTGFKNIDDLNKVLKDTATSWKQRK
    USA300_FPR3757  RTTGFKNIDDLNKVLKDTATSWKQRK
                    **************************