From AureoWiki
Jump to: navigation, search

Summary[edit source | edit]

  • pan ID?: SAUPAN005825000
  • symbol?: rpiA
  • description?: ribose-5-phosphate isomerase A

      descriptions from strain specific annotations:

    • ribose-5-phosphate isomerase A
    • ribose-5-phosphate isomerase
    • putative ribose 5-phosphate isomerase
  • strand?: -
  • coordinates?: 5911265..5911951
  • synteny block?: BlockID0045700
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL2329 (rpiA)
    N315:
    NCTC8325:
    Newman:
    NWMN_2237 (rpi)
    USA300_FPR3757:
    04-02981:
    SA2981_2275 (rpi)
    08BA02176:
    C248_2378
    11819-97:
    MS7_2354 (rpiA)
    71193:
    ST398NM01_2388
    ECT-R 2:
    ECTR2_2196 (rpiA)
    ED133:
    SAOV_2376c
    ED98:
    SAAV_2400
    HO 5096 0412:
    SAEMRSA15_22330
    JH1:
    SaurJH1_2404
    JH9:
    SaurJH9_2361
    JKD6008:
    SAA6008_02374 (rpiA)
    JKD6159:
    SAA6159_02240 (rpiA)
    LGA251:
    SARLGA251_21190
    M013:
    M013TW_2293
    MRSA252:
    SAR2422
    MSHR1132:
    SAMSHR1132_21610
    MSSA476:
    SAS2228
    Mu3:
    SAHV_2320
    Mu50:
    SAV2336
    MW2:
    MW2256
    RF122:
    SAB2213c
    ST398:
    SAPIG2388 (rpiA)
    T0131:
    SAT0131_02521
    TCH60:
    HMPREF0772_10858 (rpiA)
    TW20:
    SATW20_24680
    USA300_TCH1516:
    USA300HOU_2316
    VC40:
    SAVC_10545

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MKDVKALKLMTLNDVLSQINGDMTLGIGTGSTMELLLPQMAQLIKERGYNITGVCTSNKI
    N315            MKDVKALKLMTLNDVLSQINGDMTLGIGTGSTMELLLPQMAQLIKERGYNITGVCTSNKI
    NCTC8325        MKDVKALKLMTLNDVLSQINGDMTLGIGTGSTMELLLPQMAQLIKERGYNITGVCTSNKI
    Newman          MKDVKALKLMTLNDVLSQINGDMTLGIGTGSTMELLLPQMAQLIKERGYNITGVCTSNKI
    USA300_FPR3757  MKDVKALKLMTLNDVLSQINGDMTLGIGTGSTMELLLPQMAQLIKERGYNITGVCTSNKI
                    ************************************************************

    COL             AFLAKELGIKICEINDVDHIDLAIDGADEVDPSLNIIKGGGGALFREKVIDEMASRFVVV
    N315            AFLAKELGIKICEINDVDHIDLAIDGADEVDPSLNIIKGGGGALFREKVIDEMASRFVVV
    NCTC8325        AFLAKELGIKICEINDVDHIDLAIDGADEVDPSLNIIKGGGGALFREKVIDEMASRFVVV
    Newman          AFLAKELGIKICEINDVDHIDLAIDGADEVDPSLNIIKGGGGALFREKVIDEMASRFVVV
    USA300_FPR3757  AFLAKELGIKICEINDVDHIDLAIDGADEVDPSLNIIKGGGGALFREKVIDEMASRFVVV
                    ************************************************************

    COL             VDETKIVQYLGETFKLPVEVDKFNWYQILRKIESYADIKVERRVNEDVAFITDNGNYILD
    N315            VDETKIVQYLGETFKLPVEVDKFNWYHILRKIESYADIKVERRVNEDVAFITDNGNYILD
    NCTC8325        VDETKIVQYLGETFKLPVEVDKFNWYHILRKIESYADIKVERRVNEDVAFITDNGNYILD
    Newman          VDETKIVQYLGETFKLPVEVDKFNWYHILRKIESYADIKVERRVNEDVAFITDNGNYILD
    USA300_FPR3757  VDETKIVQYLGETFKLPVEVDKFNWYHILRKIESYADIKVERRVNEDVAFITDNGNYILD
                    **************************:*********************************

    COL             CKLPKGIDPYKFHEYLIHLTGVFETGYFLDMADQVIVGTQEGVKILEK
    N315            CKLPKGIDPYKFHEYLIHLTGVFETGYFLDMADQVIVGTQEGVKILEK
    NCTC8325        CKLPKGIDPYKFHEYLIHLTGVFETGYFLDMADQVIVGTQEGVKILEK
    Newman          CKLPKGIDPYKFHEYLIHLTGVFETGYFLDMADQVIVGTQEGVKILEK
    USA300_FPR3757  CKLPKGIDPYKFHEYLIHLTGVFETGYFLDMADQVIVGTQEGVKILEK
                    ************************************************