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Summary[edit source | edit]

  • pan ID?: SAUPAN005967000
  • symbol?: bioD
  • description?: dethiobiotin synthetase

      descriptions from strain specific annotations:

    • dethiobiotin synthetase
    • dethiobiotin synthase
    • putative dethiobiotin synthetase
  • strand?: -
  • coordinates?: 6028770..6029456
  • synteny block?: BlockID0047110
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL2428 (bioD)
    N315:
    SA2215 (bioD)
    NCTC8325:
    Newman:
    NWMN_2326 (bioD)
    USA300_FPR3757:
    04-02981:
    SA2981_2364 (bioD)
    08BA02176:
    C248_2475 (bioD)
    11819-97:
    MS7_2442 (bioD)
    71193:
    ST398NM01_2480
    ECT-R 2:
    ECTR2_2286 (bioD)
    ED133:
    SAOV_2476c
    ED98:
    SAAV_2493 (bioD)
    HO 5096 0412:
    SAEMRSA15_23260
    JH1:
    SaurJH1_2501
    JH9:
    SaurJH9_2453
    JKD6008:
    SAA6008_02469 (bioD)
    JKD6159:
    SAA6159_02328 (bioD)
    LGA251:
    SARLGA251_22090
    M013:
    M013TW_2389
    MRSA252:
    SAR2517
    MSHR1132:
    SAMSHR1132_22560
    MSSA476:
    SAS2318
    Mu3:
    SAHV_2411 (bioD)
    Mu50:
    SAV2427 (bioD)
    MW2:
    MW2350 (bioD)
    RF122:
    SAB2308c
    ST398:
    SAPIG2480 (bioD)
    T0131:
    SAT0131_02622 (rpmB)
    TCH60:
    HMPREF0772_10760 (bioD)
    TW20:
    SATW20_25570
    USA300_TCH1516:
    USA300HOU_2411 (bioD)
    VC40:
    SAVC_11010

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MRIFITSTNTDVGKTYVTKHLYHALKTRGHRVCIFKPFQTEERQDGTFPDLEVFKNECDL
    N315            MRIFITSTNTDVGKTYVTKHLYHALKTRGHRVCVFKPFQTEERQDGTFPDLEVFKNECDL
    NCTC8325        MRIFITSTNTDVGKTYVTKHLYHALKTRGHRVCIFKPFQTEERQDGTFPDLEVFKNECDL
    Newman          MRIFITSTNTDVGKTYVTKHLYHALKTRGHRVCIFKPFQTEERQDGTFPDLEVFKNECDL
    USA300_FPR3757  MRIFITSTNTDVGKTYVTKHLYHALKTRGHRVCIFKPFQTEERQDGTFPDLEVFKNECDL
                    *********************************:**************************

    COL             SYDITSLYTFKQPVSPHLAFKMTDQIFLNKQRVLDKVKVLDKEFDFILIEGAGGIAVPIY
    N315            SYDITSLYTFKQPVSPHLAFKMTDQIFLNKQRVLDKVKVLDKEFDFILIEGAGGIAVPIY
    NCTC8325        SYDITSLYTFKQPVSPHLAFKMTDQIFLNKQRVLDKVKVLDKEFDFILIEGAGGIAVPIY
    Newman          SYDITSLYTFKQPVSPHLAFKMTDQIFLNKQRVLDKVKVLDKEFDFILIEGAGGIAVPIY
    USA300_FPR3757  SYDITSLYTFKQPVSPHLAFKMTDQIFLNKQRVLDKVKVLDKEFDFILIEGAGGIAVPIY
                    ************************************************************

    COL             EGTDDFYMTKDLINDCADCVISVLPSKLGAISDAIVHQDYVNQNVSASNFLIMNRYTDSY
    N315            EGTDDFYMTKDLINDCADCVISVLPSKLGAISDAVVHQDYVNKNVSASNFLIMNRYTDSY
    NCTC8325        EGTDDFYMTKDLINDCADCVISVLPSKLGAISDAIVHQDYVNQNVSASNFLIMNRYTDSY
    Newman          EGTDDFYMTKDLINDCADCVISVLPSKLGAISDAIVHQDYVNQNVSASNFLIMNRYTDSY
    USA300_FPR3757  EGTDDFYMTKDLINDCADCVISVLPSKLGAISDAIVHQDYVNQNVSASNFLIMNRYTDSY
                    **********************************:*******:*****************

    COL             IEKDNQMTIGKLTNKTVYTFEEHATYENFSEAFLKQLIGVKNELHTTT
    N315            IEKDNQITIGKLTNKTVYTFEEHATYENFSEAFLKQLIGVKNELHTTT
    NCTC8325        IEKDNQMTIGKLTNKTVYTFEEHATYENFSEAFLKQLIGVKNELHTTT
    Newman          IEKDNQMTIGKLTNKTVYTFEEHATYENFSEAFLKQLIGVKNELHTTT
    USA300_FPR3757  IEKDNQMTIGKLTNKTVYTFEEHATYENFSEAFLKQLIGVKNELHTTT
                    ******:*****************************************