PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN006184000
• symbol^?: sdaAB
• synonym:
• description^?: L-serine dehydratase, iron-sulfur-dependent subunit beta

  descriptions from strain specific annotations:

  • L-serine dehydratase, iron-sulfur-dependent subunit beta
  • L-serine dehydratase, iron-sulfur-dependent, beta subunit
  • L-serine ammonia-lyase, iron-sulfur-dependent, subunit beta
  • L-serine dehydratase iron-sulfur-dependent subunit beta
  • beta-subunit of L-serine dehydratase
  • L-serine ammonia-lyase beta subunit
  • L-serine dehydratase, beta subunit
  • L-serine dehydratase beta subunit
  • L-serine dehydratase subunit beta
  • putative L-serine dehydratase, beta chain
• strand^?: -
• coordinates^?: 6248450..6249130
• synteny block^?: BlockID0049090
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL2545 (sdaAB)
N315:
SA2319
NCTC8325:
SAOUHSC_02840
Newman:
NWMN_2430 (sdhB)
USA300_FPR3757:
SAUSA300_2470 (sdaAB)
04-02981:
SA2981_2467
08BA02176:
C248_2589
11819-97:
MS7_2537 (sdaAB)
6850:
RSAU_002373 (sdaAB)
71193:
ST398NM01_2582
ECT-R 2:
ECTR2_2383 (sdaAB)
ED133:
SAOV_2575c
ED98:
SAAV_2597 (sdaAB)
HO 5096 0412:
SAEMRSA15_24300
JH1:
SaurJH1_2607
JH9:
SaurJH9_2555
JKD6008:
SAA6008_02569 (sdaAB)
JKD6159:
SAA6159_02427 (sdaAB)
LGA251:
SARLGA251_23060
M013:
M013TW_2503
MRSA252:
SAR2611
MSHR1132:
SAMSHR1132_23510
MSSA476:
SAS2417
Mu3:
SAHV_2515
Mu50:
SAV2531
MW2:
MW2452
RF122:
SAB2405c
ST398:
SAPIG2582 (sdaAB)
T0131:
SAT0131_02736
TCH60:
HMPREF0772_10660 (sdaAB)
TW20:
SATW20_26520
USA300_TCH1516:
USA300HOU_2522 (sdhB2)
VC40:
SAVC_11530

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MAKSYDYQSAFDIIGPVMMGPSSSHTAGAVKIGNSARAILGDIPKNIEIHYYESFAQTHQ
  N315            MAKSYDYQSAFDIIGPVMMGPSSSHTAGAVKIGNSARAILGDIPKNIEIHYYESFAQTHQ
  NCTC8325        MAKSYDYQSAFDIIGPVMMGPSSSHTAGAVKIGNSARAILGDIPKNIEIHYYESFAQTHQ
  Newman          MAKSYDYQSAFDIIGPVMMGPSSSHTAGAVKIGNSARAILGDIPKNIEIHYYESFAQTHQ
  USA300_FPR3757  MAKSYDYQSAFDIIGPVMMGPSSSHTAGAVKIGNSARAILGDIPKNIEIHYYESFAQTHQ
                  ************************************************************
  
  COL             GHGTDVAIVGGAMGYSTFDNRIKSSLEIAADDGIKIDIIEEEGDSIGQHPNCAYIKSSRN
  N315            GHGTDVAIVGGAMGYSTFDNRIKSSLEIAADDGIKIDIIEEEGDSIGQHPNCAYIKSSRN
  NCTC8325        GHGTDVAIVGGAMGYSTFDNRIKSSLEIAADDGIKIDIIEEEGDSIGQHPNCAYIKSSRN
  Newman          GHGTDVAIVGGAMGYSTFDNRIKSSLEIAADDGIKIDIIEEEGDSIGQHPNCAYIKSSRN
  USA300_FPR3757  GHGTDVAIVGGAMGYSTFDNRIKSSLEIAADDGIKIDIIEEEGDSIGQHPNCAYIKSSRN
                  ************************************************************
  
  COL             DGRYIEIIGISIGGGTIKIKGIHINGLEVDLNHGLPILVVDGNMTKAQVNHFINDINDMK
  N315            DGRYIEIIGISIGGGTIKIKGIHINGLEVDLNHGLPILVVDGNMTKAQVNHFINDINDMK
  NCTC8325        DGRYIEIIGISIGGGTIKIKGIHINGLEVDLNHGLPILVVDGNMTKAQVNHFINDINDMK
  Newman          DGRYIEIIGISIGGGTIKIKGIHINGLEVDLNHGLPILVVDGNMTKAQVNHFINDINDMK
  USA300_FPR3757  DGRYIEIIGISIGGGTIKIKGIHINGLEVDLNHGLPILVVDGNMTKAQVNHFINDINDMK
                  ************************************************************
  
  COL             LDCKDEFIKIDEDKCLVVIPLNKAISESTLNTIKEKYSDVNVSYIN
  N315            LDCKDEFIKIDEDKCLVVIPLNKAISESTLNTIKEKYSDVNVSYIN
  NCTC8325        LDCKDEFIKIDEDKCLVVIPLNKAISESTLNTIKEKYSDVNVSYIN
  Newman          LDCKDEFIKIDEDKCLVVIPLNKAISESTLNTIKEKYSDVNVSYIN
  USA300_FPR3757  LDCKDEFIKIDEDKCLVVIPLNKAISESTLNTIKEKYSDVNVSYIN
                  **********************************************