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Summary[edit source | edit]

  • pan ID?: SAUPAN006293000
  • symbol?: panB
  • description?: 3-methyl-2-oxobutanoate hydroxymethyltransferase

      descriptions from strain specific annotations:

    • 3-methyl-2-oxobutanoate hydroxymethyltransferase
    • putative 3-methyl-2-oxobutanoatehydroxymethyltransferase
  • strand?: -
  • coordinates?: 6341397..6342188
  • synteny block?: BlockID0050090
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL2615 (panB)
    N315:
    SA2392 (panB)
    NCTC8325:
    Newman:
    NWMN_2496 (panB)
    USA300_FPR3757:
    04-02981:
    SA2981_2537 (panB)
    08BA02176:
    C248_2658 (panB)
    11819-97:
    MS7_2604 (panB)
    71193:
    ST398NM01_2647
    ECT-R 2:
    ECTR2_2453 (panB)
    ED133:
    SAOV_2643c
    ED98:
    SAAV_2665 (panB)
    HO 5096 0412:
    SAEMRSA15_25020 (panB)
    JH1:
    SaurJH1_2675 (panB)
    JH9:
    SaurJH9_2621 (panB)
    JKD6008:
    SAA6008_02656 (panB)
    JKD6159:
    SAA6159_02495 (panB)
    LGA251:
    SARLGA251_23720 (panB)
    M013:
    M013TW_2576
    MRSA252:
    SAR2677 (panB)
    MSHR1132:
    SAMSHR1132_24140
    MSSA476:
    SAS2484 (panB)
    Mu3:
    SAHV_2583 (panB)
    Mu50:
    SAV2599 (panB)
    MW2:
    MW2518 (panB)
    RF122:
    SAB2472c (panB)
    ST398:
    SAPIG2647 (panB)
    T0131:
    SAT0131_02831 (mscL)
    TCH60:
    HMPREF0772_10593 (panB)
    TW20:
    SATW20_27380 (panB)
    USA300_TCH1516:
    USA300HOU_2593 (panB)
    VC40:
    SAVC_11865 (panB)

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MKTVSQLIDMKQKETKISMVTAYDFPSAKQVEAAGIDMILVGDSLGMTVLGYESTVQVTL
    N315            MKTVSQLIDMKQKQTKISMVTAYDFPSAKQVEAAGIDMILVGDSLGMTVLGYESTVQVTL
    NCTC8325        ---------MKQKQTKISMVTAYDFPSAKQVEAAGIDMILVGDSLGMTVLGYESTVQVTL
    Newman          MKTVSQLIDMKQKQTKISMVTAYDFPSAKQVEAAGIDMILVGDSLGMTVLGYESIVQVTL
    USA300_FPR3757  ---------MKQKQTKISMVTAYDFPSAKQVEAAGIDMILVGDSLGMTVLGYESTVQVTL
                             ****:**************************************** *****

    COL             ADMIHHGRAVRRGAPNTFVVVDMPIGAVGISMTQDLNHALKLYQETNANAIKAEGAHITP
    N315            ADMIHHGRAVRRGAPNTFVVVDMPIGAVGISMTQDLNHALKLYQETNANAIKAEGAHITP
    NCTC8325        ADMIHHGRAVRRGAPNTFVVVDMPIGAVGISMTQDLNHALKLYQETNANAIKAEGAHITP
    Newman          ADMIHHGRAVRRGAPNTFVVVDMPIGAVGISMTQDLNHALKLYQETNANAIKAEGAHITP
    USA300_FPR3757  ADMIHHGRAVRRGAPNTFVVVDMPIGAVGISMTQDLNHALKLYQETNANAIKAEGAHITP
                    ************************************************************

    COL             FIEKATAIGIPVVAHLGLTPQSVGVMGYKLQGATKEAAEQLILDAKNVEQAGAVALVLEA
    N315            FIEKATAIGIPVVAHLGLTPQSVGVMGYKLQGATKEAAEQLILDAKNVEQAGAVALVLEA
    NCTC8325        FIEKATAIGIPVVAHLGLTPQSVGVMGYKLQGATKEAAEQLILDAKNVEQAGAVALVLEA
    Newman          FIEKATAIGIPVVAHLGLTPQSVGVMGYKLQGATKEAAEQLILDAKNVEQAGAVALVLEA
    USA300_FPR3757  FIEKATAIGIPVVAHLGLTPQSVGVMGYKLQGATKEAAEQLILDAKNVEQAGAVALVLEA
                    ************************************************************

    COL             IPNDLAEEISKHLTIPVIGIGAGKGTDGQVLVYHDMLNYGVEHKAKFVKQFADFSVGVDG
    N315            IPNDLAEEISKHLTIPVIGIGAGKGTDGQVLVYHDMLNYGVEHKAKFVKQFADFSVGVDG
    NCTC8325        IPNDLAEEISKHLTIPVIGIGAGKGTDGQVLVYHDMLNYGVEHKAKFVKQFADFSVGVDG
    Newman          IPNDLAEEISKHLTIPVIGIGAGKGTDGQVLVYHDMLNYGVEHKAKFVKQFADFSVGVDG
    USA300_FPR3757  IPNDLAEEISKHLTIPVIGIGAGKGTDGQVLVYHDMLNYGVEHKAKFVKQFADFSVGVDG
                    ************************************************************

    COL             LKQYDQEVKSGAFPSEEYTYKKKIMNEVNNND
    N315            LKQYDQEVKSGAFPSEEYTYKKKIMNEVNNND
    NCTC8325        LKQYDQEVKSGAFPSEEYTYKKKIMNEVNNND
    Newman          LKQYDQEVKSGAFPSEEYTYKKKIMNEVNNND
    USA300_FPR3757  LKQYDQEVKSGAFPSEEYTYKKKIMNEVNNND
                    ********************************