From AureoWiki
Jump to: navigation, search

Summary[edit source | edit]

  • pan ID?: SAUPAN006297000
  • symbol?: ldh2
  • description?: L-lactate dehydrogenase

      descriptions from strain specific annotations:

    • L-lactate dehydrogenase
    • L-lactate dehydrogenase 2
  • strand?: -
  • coordinates?: 6344963..6345922
  • synteny block?: BlockID0050130
  • occurrence?: in 97% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL2618 (ldh2)
    N315:
    NCTC8325:
    Newman:
    NWMN_2499 (ldh)
    USA300_FPR3757:
    04-02981:
    SA2981_2540
    08BA02176:
    C248_2661 (ldh2)
    11819-97:
    MS7_2607
    71193:
    ST398NM01_2650
    ECT-R 2:
    ECTR2_2456
    ED133:
    SAOV_2646c
    ED98:
    SAAV_2668 (ldh2)
    HO 5096 0412:
    SAEMRSA15_25060 (ldh2)
    JH1:
    SaurJH1_2678
    JH9:
    SaurJH9_2624
    JKD6008:
    SAA6008_02659 (ldh2)
    JKD6159:
    SAA6159_02498 (ldh2)
    LGA251:
    SARLGA251_23750 (ldh2)
    M013:
    M013TW_2579
    MRSA252:
    SAR2680 (ldh2)
    MSHR1132:
    SAMSHR1132_24170
    MSSA476:
    SAS2487
    Mu3:
    SAHV_2586
    Mu50:
    SAV2602
    MW2:
    MW2521
    RF122:
    SAB2475c (ldh)
    ST398:
    SAPIG2650
    T0131:
    SAT0131_02834 (acnA)
    TCH60:
    HMPREF0772_10590 (ldhB)
    TW20:
    SATW20_27410 (ldh2)
    USA300_TCH1516:
    VC40:
    SAVC_11880

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MKTFGKKVVLIGDGSVGSSYAFAMVTQGVADEFVIIDIAKDKVKADVQDLNHGTVHSPSP
    N315            MKTFGKKVVLIGDGSVGSSYAFAMVTQGVADEFVIIDIAKDKVKADVQDLNHGTVHSPSP
    NCTC8325        MKTFGKKVVLIGDGSVGSSYAFAMVTQGVADEFVIIDIAKDKVKADVQDLNHGTVHSPSP
    Newman          MKTFGKKVVLIGDGSVGSSYAFAMVTQGVADEFVIIDIAKDKVKADVQDLNHGTVHSPSP
    USA300_FPR3757  MKTFGKKVVLIGDGSVGSSYAFAMVTQGVADEFVIIDIAKDKVKADVQDLNHGTVHSPSP
                    ************************************************************

    COL             VDVKAGEYEDCKDADLVVITAGAPQKPGETRLQLVEKNTKIMKSIVKSVMDSGFDGYFLI
    N315            VDVKAGEYEDCKDADLVVITAGAPQKPGETRLQLVEKNTKIMKSIVKSVMDSGFDGYFLI
    NCTC8325        VDVKAGEYEDCKDADLVVITAGAPQKPGETRLQLVEKNTKIMKSIVKSVMDSGFDGYFLI
    Newman          VDVKAGEYEDCKDADLVVITAGAPQKPGETRLQLVEKNTKIMKSIVKSVMDSGFDGYFLI
    USA300_FPR3757  VDVKAGEYEDCKDADLVVITAGAPQKPGETRLQLVEKNTKIMKSIVKSVMDSGFDGYFLI
                    ************************************************************

    COL             AANPVDILTRFVKEYTGLPAERVIGSGTVLDSARLQYLISQELGVAPSSVDASIIGEHGD
    N315            AANPVDILTRFVKEYTGLPAERVIGSGTVLDSARLQYLISQELGVAPSSVDASIIGEHGD
    NCTC8325        AANPVDILTRFVKEYTGLPAERVIGSGTVLDSARLQYLISQELGVAPSSVDASIIGEHGD
    Newman          AANPVDILTRFVKEYTGLPAERVIGSGTVLDSARLQYLISQELGVAPSSVDASIIGEHGD
    USA300_FPR3757  AANPVDILTRFVKEYTGLPAERVIGSGTVLDSARLQYLISQELGVAPSSVDASIIGEHGD
                    ************************************************************

    COL             TELAVWSQANVAGISVYDTLKEQTGSEAKAEEIYVNTRDAAYEIIQAKGSTYYGIALALM
    N315            TELAVWSQANVAGISVYDTLKEQTGSEAKAEEIYVNTRDAAYEIIQAKGSTYYGIALALM
    NCTC8325        TELAVWSQANVAGISVYDTLKEQTGSEAKAEEIYVNTRDAAYEIIQAKGSTYYGIALALM
    Newman          TELAVWSQANVAGISVYDTLKEQTGSEAKAEEIYVNTRDAAYEIIQAKGSTYYGIALALM
    USA300_FPR3757  TELAVWSQANVAGISVYDTLKEQTGSEAKAEEIYVNTRDAAYEIIQAKGSTYYGIALALM
                    ************************************************************

    COL             RISKAILNNENNVLNVSIQLDGQYGGHKGVYLGVPTLVNQHGAVKIYEMPLSAEEQALFD
    N315            RISKAILNNENNVLNVSIQLDGQYGGHKGVYLGVPTLVNQHGAVKIYEMPLSAEEQALFD
    NCTC8325        RISKAILNNENNVLNVSIQLDGQYGGHKGVYLGVPTLVNQHGAVKIYEMPLSAEEQALFD
    Newman          RISKAILNNENNVLNVSIQLDGQYGGHKGVYLGVPTLVNQHGAVKIYEMPLSAEEQALFD
    USA300_FPR3757  RISKAILNNENNVLNVSIQLDGQYGGHKGVYLGVPTLVNQHGAVKIYEMPLSAEEQALFD
                    ************************************************************

    COL             KSVKTLEDTFDSIKYLLED
    N315            KSVKILEDTFDSIKYLLED
    NCTC8325        KSVKTLEDTFDSIKYLLED
    Newman          KSVKTLEDTFDSIKYLLED
    USA300_FPR3757  KSVKTLEDTFDSIKYLLED
                    **** **************