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NCBI: 10-JUN-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_0039 [new locus tag: SAUSA300_RS00210 ]
  • pan locus tag?: SAUPAN000446000
  • symbol: SAUSA300_0039
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SAUSA300_0039 [new locus tag: SAUSA300_RS00210 ]
  • symbol: SAUSA300_0039
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 49125..50912
  • length: 1788
  • essential: unknown other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    ATGAGTTACACATTGTTTGAAATTGGCCCATTTGCTTTAGATTCCTTCGGTTGGAAAGAA
    ACGATACCACCTAAAAAAGATGGTGACAGTGAAAAAGTGGTTAGAATGGCTAGCCCTATT
    ATTGTTAATGCAAGATTTTCTGATCCAATTACTGGTGTTGAAAAGTTGATTATTACTAAC
    AACAATGGTAAAAAAGACATTTTTGAGTCTGATATCTTAACAACACGAAACTTACCTTCT
    TTAATTAAATATGGCTACAGTATTAACGAGAAGTATATTAGATCATTGAGTTATGCCTTG
    CAATTGATGCGAGATAGATTACCACTTTCTGAATTATATGAGGGTGTAGGTATACTAGAG
    ACACCTTTTGGCTACTTGATATCGCTAGATAAAGTTCTCAAATCTATTCAATTTAATCAG
    TCCTCACCTTCATACCCTATTGTAGATAGTGCTTATGACTTAACTCCTAAAGGTACATTT
    GATAATTGGTTTAACATGTATATTGACGAGGTTAAAGGTCATCTTCTTTTAGAATTGGCA
    GTCATATTTGGGATTTCTGCCTTAGTGACAAGTTTTCTGAAGCATAAACATGAAATCGAA
    TTTGCAGGAATTCTCTTTAGTTTTACAGGTCAATCCTCAACCGGTAAGTCAACCGCAGCT
    GCTTTAGCTGTATCAGTCGCTGGTAACCCTACCAAAGGTAATGAAACTCTTTTTAGAAGT
    TGGAATGCCACACGAAACGCACTTGAAGGTTATTTGAGTAACAATTATGGCATTCCTATA
    GTATTTGATGAGCTTTCATCTACGACACTTAGAGATACCACGGGTTTGTTATATTCCATC
    GCTGAAGGTCAAGGTCGTCAACGTTCAAACGTTCATGGAGAAGTTAAAACGCCTAAGAAT
    TGGGGTACTTCTGTCATTTCAACGTCAGAATACAGTATTTTTAATGATTCAGCTCAAAAC
    GATGGATTACGTGTAAGAACCATCGAGATTAATGAACAATTCACTACAAATGCGACCAAT
    GCTGACAATATTAAAAAAGCTGTAGCACTAAACTATGGTCATGTTTTACCGTTAGTAGCT
    AAATATCTTATAAATCGTGAAGATGAAGTTATTCAATGGTTTTACAAGGAAGTAGATTGG
    TTTGAAGCTAAATTGAAAGATGAAACAAACAATACAGGTATTCGTATGTTTAAGCGTTAT
    GCAGTCATTACAACATCTGCGAAAATATTAGGTCGTGTTTTATCTACAGATATTGATATC
    GCTAATATAAGAGACTACTTTATTGATTATCATACTCATACAGTCTCTGAACGCTCATTA
    GCTGATAAAGCTATTGATGTCATCATTCAATTTGTGGCACAAAACAGAGGTAAGTTTTCA
    GATGAAGGTGCTTTGAAAAATATGTTTGAGAACTATGGATTAATCTCATTAAAAGATGAC
    CATATCGAAGTAAAAATAATTGCGAACGTTTTTAAACAGATGCTAAACAATCATCAATTT
    CAAGATGTTAATAATGTTGTCAACGCCTTAAGAGATAAAGGTTTCATATTAGCTGACCGT
    GGACGCCAAACAACTAAAAGAAGTGTCAAAGATAATAGCGGTAAAAAACAATCACTTGTA
    TTTTACCATCTAAAATTAGATGTAGAGTTTGCATCTATCCTCGGATTAACTAAAGATAAG
    TCGTTACTTCAAAATTGGACACCGTCAAATGATAACAAAGCTGCGAAAGAACTTTTTAAA
    TCCGCTAATGAAGGGATAGGCCCTTCAGGAGTTCACGAAGATTTCTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1788

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SAUSA300_0039 [new locus tag: SAUSA300_RS00210 ]
  • symbol: SAUSA300_0039
  • description: hypothetical protein
  • length: 595
  • theoretical pI: 6.93436
  • theoretical MW: 66836.2
  • GRAVY: -0.281008

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:  
    FIG01108399: hypothetical protein 
  • PFAM:
    P-loop_NTPase (CL0023) DUF927; Domain of unknown function (DUF927) (PF06048; HMM-score: 213.6)
    and 2 more
    AAA_29; P-loop containing region of AAA domain (PF13555; HMM-score: 14.6)
    Thioredoxin (CL0172) GSHPx; Glutathione peroxidase (PF00255; HMM-score: 12.7)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helix: 1
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 0.83
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.118
    • Ymax_pos: 53
    • Cmax: 0.118
    • Cmax_pos: 29
    • Smax: 0.201
    • Smax_pos: 49
    • Smean: 0.097
    • D: 0.11
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MSYTLFEIGPFALDSFGWKETIPPKKDGDSEKVVRMASPIIVNARFSDPITGVEKLIITNNNGKKDIFESDILTTRNLPSLIKYGYSINEKYIRSLSYALQLMRDRLPLSELYEGVGILETPFGYLISLDKVLKSIQFNQSSPSYPIVDSAYDLTPKGTFDNWFNMYIDEVKGHLLLELAVIFGISALVTSFLKHKHEIEFAGILFSFTGQSSTGKSTAAALAVSVAGNPTKGNETLFRSWNATRNALEGYLSNNYGIPIVFDELSSTTLRDTTGLLYSIAEGQGRQRSNVHGEVKTPKNWGTSVISTSEYSIFNDSAQNDGLRVRTIEINEQFTTNATNADNIKKAVALNYGHVLPLVAKYLINREDEVIQWFYKEVDWFEAKLKDETNNTGIRMFKRYAVITTSAKILGRVLSTDIDIANIRDYFIDYHTHTVSERSLADKAIDVIIQFVAQNRGKFSDEGALKNMFENYGLISLKDDHIEVKIIANVFKQMLNNHQFQDVNNVVNALRDKGFILADRGRQTTKRSVKDNSGKKQSLVFYHLKLDVEFASILGLTKDKSLLQNWTPSNDNKAAKELFKSANEGIGPSGVHEDF

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]