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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 10-JUN-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_0061 [new locus tag: SAUSA300_RS00310 ]
  • pan locus tag?: SAUPAN000810000
  • symbol: arcC
  • pan gene symbol?: arcC
  • synonym:
  • product: carbamate kinase

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SAUSA300_0061 [new locus tag: SAUSA300_RS00310 ]
  • symbol: arcC
  • product: carbamate kinase
  • replicon: chromosome
  • strand: -
  • coordinates: 68890..69819
  • length: 930
  • essential: unknown

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGTCTAAAATCGTCGTAGCTTTGGGTGGTAACGCTTTAGGACAATCGCCTAAAGAACAA
    TTAGATTTATTAAAAAGTACATCTAAATCTCTAGTAAGTTTAATCGATAAAGGATACGAA
    ATTGTAATTAGTCATGGTAATGGTCCACAAGTTGGAAGTATTAACTTAGGTTTAAATTAT
    GCGGCGGAACACAAACAAGGTCCTCCTTTTCCTTTCCCTGAATGTGGTGCTATGAGTCAA
    GCTTATATTGGCTATCAGATGCAAGAAAGTTTACAAAACGAACTTCATTCAATGGGCATA
    GATAAACAAGTTGTTACGCTAGTAACACAAGTTCAAGTTGCAAGCGATGATTCTGCTTTC
    AATAACCCTACTAAACCAATTGGATTATTTTATACAAAAGAGCAGGCTGATAAATTTACG
    AAAGAAAAAGGTTATACTTTTGTAGAAGATTCTGGACGCGGCTATCGTCGCGTTGTCCCT
    TCCCCACAACCTATAAGTATAGTTGAGTTAGATAGTATAGAAACATTAATCACTCATGGA
    ACACTAGTTATCGCTGCCGGCGGTGGTGGAATTCCAGTAATTAAGGAAAATGAAGTTTAT
    ACAGGTGTTGATGCAGTTATTGATAAAGATAAAACGAGTGCTTTATTAGCAGCACATTTA
    CAATCTGATCAATTAATCATATTAACTGCTGTGGACCATGTTTACATTAACTATGGAAAA
    GAAAACCAAAGAGGTCTCGATGAAGTGTCTGTGGATGAAATGAAAAAACATATCTCTGAT
    GGTCAATTTGCTAAAGGAAGTATGCTTCCAAAAGTTGAAGCTGCACTTCAATTTCTTGAA
    AAAAATACTAAAGGCAGTGTTTTGATTACATCTCTAGCAGGATTAGGGGACGCTTTAGAC
    GGTAAAATAGGAACATTAATTAAGAATTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    930

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SAUSA300_0061 [new locus tag: SAUSA300_RS00310 ]
  • symbol: ArcC
  • description: carbamate kinase
  • length: 309
  • theoretical pI: 5.37894
  • theoretical MW: 33156.5
  • GRAVY: -0.145631

Function[edit source | edit]

  • reaction:
    EC 2.7.2.2?  ExPASy
    Carbamate kinaseATP + NH3 + CO2 = ADP + carbamoyl phosphate
  • TIGRFAM:
    MetabolismEnergy metabolismAmino acids and aminescarbamate kinase (TIGR00746; EC 2.7.2.2; HMM-score: 378.5)
    MetabolismAmino acid biosynthesisGlutamate familyacetylglutamate kinase (TIGR00761; EC 2.7.2.8; HMM-score: 47.6)
    MetabolismPurines, pyrimidines, nucleosides, and nucleotidesNucleotide and nucleoside interconversionsputative uridylate kinase (TIGR02076; EC 2.7.4.-; HMM-score: 29.6)
    MetabolismAmino acid biosynthesisGlutamate familyglutamate 5-kinase (TIGR01027; EC 2.7.2.11; HMM-score: 27.9)
    MetabolismAmino acid biosynthesisGlutamate familydelta l-pyrroline-5-carboxylate synthetase (TIGR01092; HMM-score: 20.6)
  • TheSEED:  
    Amino Acids and DerivativesArginine; urea cycle, polyaminesArginine and Ornithine Degradation Carbamate kinase (EC 2.7.2.2) 
    Arginine; urea cycle, polyaminesArginine Deiminase Pathway Carbamate kinase (EC 2.7.2.2) 
    Arginine; urea cycle, polyaminesPolyamine Metabolism Carbamate kinase (EC 2.7.2.2) 
  • PFAM:
    no clan definedAA_kinase; Amino acid kinase family (PF00696; HMM-score: 112)
    HAD (CL0137) Hydrolase_3; haloacid dehalogenase-like hydrolase (PF08282; HMM-score: 14.4)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 3.33
    • Cellwall Score: 3.33
    • Extracellular Score: 3.33
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 0.83
    • Signal Peptide Possibility: -0.5
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.167
    • Ymax_pos: 22
    • Cmax: 0.123
    • Cmax_pos: 62
    • Smax: 0.344
    • Smax_pos: 14
    • Smean: 0.197
    • D: 0.178
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MSKIVVALGGNALGQSPKEQLDLLKSTSKSLVSLIDKGYEIVISHGNGPQVGSINLGLNYAAEHKQGPPFPFPECGAMSQAYIGYQMQESLQNELHSMGIDKQVVTLVTQVQVASDDSAFNNPTKPIGLFYTKEQADKFTKEKGYTFVEDSGRGYRRVVPSPQPISIVELDSIETLITHGTLVIAAGGGGIPVIKENEVYTGVDAVIDKDKTSALLAAHLQSDQLIILTAVDHVYINYGKENQRGLDEVSVDEMKKHISDGQFAKGSMLPKVEAALQFLEKNTKGSVLITSLAGLGDALDGKIGTLIKN

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]