From AureoWiki
Jump to: navigation, search
NCBI: 10-JUN-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_0678 [new locus tag: SAUSA300_RS03640 ]
  • pan locus tag?: SAUPAN002577000
  • symbol: SAUSA300_0678
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SAUSA300_0678 [new locus tag: SAUSA300_RS03640 ]
  • symbol: SAUSA300_0678
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 752983..753600
  • length: 618
  • essential: unknown other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    ATGCAATCTCGATACATCGCTAGAATTTACTTTTTAATTTTATTTATCGTCTCCCTTTTT
    GAGACTAAAATTTTTCAATTTATGACTTTAAATTTGTTTTTAGCATATATACCTTTTGAG
    CTTAGTCTATTATTACGATTATTCAAACCGAATAAAAAGTATGAATGGCCACTCTTTATC
    ATATATAGTTTTATATTTGTGTTACTTTTACCAAATACATTTTATATGGTAACTGATTTA
    ATCCATTTGAACCAATTTCAATTCAACTTTTACGCAGGACTAAATTTAAGTGAGTGGAAA
    TACTTTACCTATTTACTGCTTGGTGTCTTCTTAGCGGTTTATGTGATGATTTTAATCTAT
    TTTGAAATACTAACATTGACTTCTCACCGTTGGCTTAATAGATTAATTGTTGTCGTGCTA
    ATGTTTTTAAATGGATTCGGAATTTATATTGGTCGTTTCTTACGCTTACATTCCGTTTAT
    TTCTTTAATGAGCCCTTACATGTTCTAAATCACATTCTAGAAAGTCTAACGCTTAAAACT
    GCTATGTTTGTATGTTTTATGGTTGTCATGCAAGCAGCAATTCTATTATTTGGAAAAGGA
    GTGCGTTTGAACAAGTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    618

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SAUSA300_0678 [new locus tag: SAUSA300_RS03640 ]
  • symbol: SAUSA300_0678
  • description: hypothetical protein
  • length: 205
  • theoretical pI: 9.91563
  • theoretical MW: 24591.6
  • GRAVY: 0.920976

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:  
    FIG01108543: hypothetical protein 
  • PFAM:
    no clan definedDUF1361; Protein of unknown function (DUF1361) (PF07099; HMM-score: 125.7)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.119
    • Ymax_pos: 11
    • Cmax: 0.134
    • Cmax_pos: 28
    • Smax: 0.219
    • Smax_pos: 2
    • Smean: 0.129
    • D: 0.123
  • predicted transmembrane helices (TMHMM): 6

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MQSRYIARIYFLILFIVSLFETKIFQFMTLNLFLAYIPFELSLLLRLFKPNKKYEWPLFIIYSFIFVLLLPNTFYMVTDLIHLNQFQFNFYAGLNLSEWKYFTYLLLGVFLAVYVMILIYFEILTLTSHRWLNRLIVVVLMFLNGFGIYIGRFLRLHSVYFFNEPLHVLNHILESLTLKTAMFVCFMVVMQAAILLFGKGVRLNK

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]