NCBI: 10-JUN-2013
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_0881 [new locus tag: SAUSA300_RS04750 ]
- pan locus tag?: SAUPAN003121000
- symbol: SAUSA300_0881
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: SAUSA300_0881 [new locus tag: SAUSA300_RS04750 ]
- symbol: SAUSA300_0881
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 968183..969301
- length: 1119
- essential: unknown other strains
⊟Accession numbers[edit source | edit]
- Gene ID: 3913055 NCBI
- RefSeq: YP_493581 NCBI
- MicrobesOnline: 1292396 MicrobesOnline
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
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1021
1081ATGAATAAGTTAATACTTGGGATTTATTTATACCGAATTTTTTCACGAGCATACTTTTAT
TTACCGTTTTTATTAATTTACTTTTTGATTCAAGGTTATTCCATAATACAATTAGAAATA
TTAATGGCGTCTTATGGCATTGCAGCATTTTTATTCTCTCTATACAAAGAGAAGTGTTTT
AAAATTTGTAACTTAAAAGATTCTAATAAATTAGTTGTTAGTGAAATATTCAAAATCATC
GGTTTATTGTTGTTATTATATCAAAATCAATATTTAATTTTAGTAGTGGCACAAATATTA
TTAGGGTTAAGTTACTCAATGATGGCGGGTGTTGATACCGCAATAATTAAAAGAAATATA
ACAAATGAGAAATACGTACAAAATAAGTCAAATAGCTATATGTTCCTATCATTATTAATT
TCAGGGATTATAGGTAGTTATCTTTATGGAATAAATATTAAATGGCCTATAATAATGACT
GGTATATTTTCAATTCTAACAATTATAATTATTCGATGCACATTAGTTGAAAATAGGGAA
TTAAATTTAATAGGAGAAACAAAGGGAAAGATAAAGAAATTTCTACCAGAAGAGAAGTTT
TGGATATTGCATTATTCTTTTTTAAGAGCGTTAATATTAGGATTTTTTATAGGATTTATT
CCAATTAATATATATAATGATTTAAAACTGAATAATTTACAATTTATTTCAGTATTAACT
TGTTACACAGTTATGGGTTTTGTATCTTCACGTTATTTAACTAAATACTTGAATTATAAG
TTTGTGTCAGAAATTTGTTTAGTAATATTTTTAATAATATATACATATCAAAGTTTCATA
GCAGTTACTATTTCTATGATATTTTTAGGTATTTCTTCAGGGTTAACTCGTCCACAAACT
ATAAATAAACTTTCTAGCAGTAGTAACTTAAGAGTGATGCTTAATTATGCAGAAACGTTA
TATTTTATTTTTAATATCGCATTTTTACTTATGGGTGGTTACTTATATACAATAGGAACT
ATTCAATACTTAATATTATTTATTTCGTTATTAATTTTTATATATTTAATAATAATATTT
TATTTTACAAGGAGAGAGCAACATGAAAATAAAAACTGA60
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⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: SAUSA300_0881 [new locus tag: SAUSA300_RS04750 ]
- symbol: SAUSA300_0881
- description: hypothetical protein
- length: 372
- theoretical pI: 9.71449
- theoretical MW: 43314.8
- GRAVY: 0.756183
⊟Function[edit source | edit]
- reaction:
- TIGRFAM: multidrug resistance protein (TIGR00880; HMM-score: 27.4)
- TheSEED:
- PFAM: MFS (CL0015) MFS_1; Major Facilitator Superfamily (PF07690; HMM-score: 38.2)
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors:
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 10
- LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular Possibility: 0.17
- Signal Peptide Possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- Ymax: 0.098
- Ymax_pos: 69
- Cmax: 0.136
- Cmax_pos: 44
- Smax: 0.128
- Smax_pos: 2
- Smean: 0.051
- D: 0.08
- predicted transmembrane helices (TMHMM): 11
⊟Accession numbers[edit source | edit]
⊟Protein sequence[edit source | edit]
- MNKLILGIYLYRIFSRAYFYLPFLLIYFLIQGYSIIQLEILMASYGIAAFLFSLYKEKCFKICNLKDSNKLVVSEIFKIIGLLLLLYQNQYLILVVAQILLGLSYSMMAGVDTAIIKRNITNEKYVQNKSNSYMFLSLLISGIIGSYLYGINIKWPIIMTGIFSILTIIIIRCTLVENRELNLIGETKGKIKKFLPEEKFWILHYSFLRALILGFFIGFIPINIYNDLKLNNLQFISVLTCYTVMGFVSSRYLTKYLNYKFVSEICLVIFLIIYTYQSFIAVTISMIFLGISSGLTRPQTINKLSSSSNLRVMLNYAETLYFIFNIAFLLMGGYLYTIGTIQYLILFISLLIFIYLIIIFYFTRREQHENKN
⊟Experimental data[edit source | edit]
- experimentally validated: no data available
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
⊟Regulation[edit source | edit]
- sigma factor:
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
- Aureolib: no data available
⊟Protein stability[edit source | edit]
- half-life: no data available
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
⊟Relevant publications[edit source | edit]