NCBI: 10-JUN-2013
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_0930 [new locus tag: SAUSA300_RS04995 ]
- pan locus tag?: SAUPAN003213000
- symbol: SAUSA300_0930
- pan gene symbol?: lplA1
- synonym:
- product: lipoate-protein ligase A family protein
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: SAUSA300_0930 [new locus tag: SAUSA300_RS04995 ]
- symbol: SAUSA300_0930
- product: lipoate-protein ligase A family protein
- replicon: chromosome
- strand: -
- coordinates: 1020145..1021131
- length: 987
- essential: unknown other strains
⊟Accession numbers[edit source | edit]
- Gene ID: 3915077 NCBI
- RefSeq: YP_493628 NCBI
- MicrobesOnline: 1292445 MicrobesOnline
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
- 1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961ATGAAATTCATTAGTAATAATAATATTACAGATCCAACTTTAAACTTAGCAATGGAAGAA
TATGTTTTAAAAAATTTACCAGCAGAAGAAAGTTACTTTTTATTTTACATAAATAGACCA
TCTATCATTGTTGGAAAGAATCAAAATACGATAGAGGAAGTAAATCAGACATATATCGAT
GCTCACAACATCGATGTAGTAAGAAGAATTTCTGGTGGTGGCGCTGTTTATCATGATACT
GGCAATTTAAACTTTAGTTTTATAACAGATGATGATGGTAACAGTTTCCACAATTTCCAA
AAATTCACTGAACCAATTGTTCAAGCATTACAATCTTTAGGCGTAAATGCTGAATTAACT
GGTCGTAACGATATTCAAGTTGGACAAGCGAAAATCTCAGGGAATGCTATGGTTAAAGTT
AAAAATAGAATGTTTAGTCATGGTACGTTGATGTTAAATAGTGATTTAGACGAAGTTCAG
AATGCACTAAAAGTTAATCCAGCTAAGATTAAATCAAAAGGTATTAAATCTGTTCGTAAA
CGGGTAGCAAACATTCAAGAATTTTTAAATGACCCTTTAGAAATTGAAGAATTTAAAAAA
ATCATCTTGAAAACTATCTTTGGAGAAACTGAAGTAGAAGAATATAAATTAACGGATGAA
GATTGGGAAAATATTGAAAAGTTAAGTAACGACAAATATAGAACTTGGGAATGGAATTAT
GGTAGAAACCCTAAATATAACTTTGAACGCGAGGAAAAATTTGAAAAAGGATTTGTACAA
ATTAAGTTTGATGTTAAACGAGGTAAAATCGAACATGCAAAAATATTCGGTGATTTCTTT
GGTGTCGGAGATGTCACTGATCTTGAAAATGCATTAGTTGGCTGTCTACACGACTTTGAG
CACATAGAAGAAGCACTATCAGAATATGATTTATATCATTATTTCGGTGACATAGATAGA
CATGAATTAATTAGATTAATGTCATAA60
120
180
240
300
360
420
480
540
600
660
720
780
840
900
960
987
⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: SAUSA300_0930 [new locus tag: SAUSA300_RS04995 ]
- symbol: SAUSA300_0930
- description: lipoate-protein ligase A family protein
- length: 328
- theoretical pI: 4.91531
- theoretical MW: 37927.4
- GRAVY: -0.522256
⊟Function[edit source | edit]
- reaction: EC 6.3.4.-? ExPASyEC 6.3.1.20? ExPASyLipoate--protein ligaseATP + (R)-lipoate + a [lipoyl-carrier protein]-L-lysine = a [lipoyl-carrier protein]-N6-(lipoyl)lysine + AMP + diphosphate
- TIGRFAM: Protein fateProtein modification and repairlipoyltransferase and lipoate-protein ligase (TIGR00545; HMM-score: 385.6)
- TheSEED:
- PFAM: SufE_NifU (CL0233) Lip_prot_lig_C; Bacterial lipoate protein ligase C-terminus (PF10437; HMM-score: 94.4)tRNA_synt_II (CL0040) BPL_LplA_LipB; Biotin/lipoate A/B protein ligase family (PF03099; HMM-score: 36)AB_hydrolase (CL0028) DUF726; Protein of unknown function (DUF726) (PF05277; HMM-score: 13.5)
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors:
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 9.97
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0.01
- Extracellular Score: 0.02
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular Possibility: 1
- Signal Peptide Possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- Ymax: 0.142
- Ymax_pos: 18
- Cmax: 0.137
- Cmax_pos: 18
- Smax: 0.189
- Smax_pos: 15
- Smean: 0.138
- D: 0.141
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit source | edit]
⊟Protein sequence[edit source | edit]
- MKFISNNNITDPTLNLAMEEYVLKNLPAEESYFLFYINRPSIIVGKNQNTIEEVNQTYIDAHNIDVVRRISGGGAVYHDTGNLNFSFITDDDGNSFHNFQKFTEPIVQALQSLGVNAELTGRNDIQVGQAKISGNAMVKVKNRMFSHGTLMLNSDLDEVQNALKVNPAKIKSKGIKSVRKRVANIQEFLNDPLEIEEFKKIILKTIFGETEVEEYKLTDEDWENIEKLSNDKYRTWEWNYGRNPKYNFEREEKFEKGFVQIKFDVKRGKIEHAKIFGDFFGVGDVTDLENALVGCLHDFEHIEEALSEYDLYHYFGDIDRHELIRLMS
⊟Experimental data[edit source | edit]
- experimentally validated: no data available
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
- SAUSA300_0930 no polycistronic organisation predicted
⊟Regulation[edit source | edit]
- sigma factor:
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
⊟Protein stability[edit source | edit]
- half-life: no data available
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
⊟Relevant publications[edit source | edit]