NCBI: 10-JUN-2013
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_0981 [new locus tag: SAUSA300_RS05280 ]
- pan locus tag?: SAUPAN003301000
- symbol: SAUSA300_0981
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: SAUSA300_0981 [new locus tag: SAUSA300_RS05280 ]
- symbol: SAUSA300_0981
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 1076325..1077497
- length: 1173
- essential: unknown other strains
⊟Accession numbers[edit source | edit]
- Gene ID: 3914940 NCBI
- RefSeq: YP_493679 NCBI
- MicrobesOnline: 1292496 MicrobesOnline
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
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1141ATGAAAATAGCAACTCTGAACAAAGGCAAAGAAACAAAATATTTTAATGGATATCCTTTA
ATTGAAGAAGAGGATATCTATTCACAAGATCATTTAAAAGAAGGAGATATTTTTCAAATT
GTGACTGATAAATCACAATATGTCGCAACGGCTTATGTTGGTCGCCAACATAAAGGATTA
GGTTGGGTTCTAACATACGATAAAGCTCAACAAATCAACACAGCTTTCTTTGTAAAATTG
TTTAATACTGCATTAGCAGAACGTGATTATTATTTTAATATAGATGGAACAAATGCTTTT
AGATTATTTAATGCTGAAGGTGATGGTGTTGGGGGATTAACAATCGACAATTACGATGGT
CATTTGTTGATTCAATGGTACTCAAAAGGTATTTATAAATTTAAATATGCCATTCTTGAA
GCGGTTAGAAAAGTATTTGATTATAAATCTATTTACGAAAAAGTAAGATTTAAAGACAGC
GAATATAGTGGTGGTTTTGTTGAAGGAGATGCACCTGAGTTTCCAATTGTTATCGAAGAA
AACTTCACATTTTATAATGTAGACCTTGAAGATGGTTTGATGACAGGTATCTTTTTAGAT
CAAAAAGAAGTGCGCAAGAAATTAAGGGATCAATATGCCAAAGAACGCCATGTTTTAAAC
TTATTTAGTTATACAGGTGCTTTTTCTGCAATAGCAGCAAGTGAGGCATCTTCAACAACA
AGTGTAGATTTGGCTAATCGTTCTCGTAGTTTAACTGAAGAAAATTTTGGATTAAATGCT
ATTGATCCTAAATCCCAATATATTTATGTCATGGACACTTTTGATTTCTATAAATATGCT
GCACGACATGGACATAGTTATGACACGATCGTGATTGATCCACCTAGCTTTGCGCGTAAC
AAAAAACGTACATTTTCAGTGCAAAAAGATTATGACAAATTAATTAATGGCGCCTTAAAT
ATCTTATCATCTGAAGGAACATTATTGTTATGTACAAACGCAAGTGTATATCCATTAAAG
CAATTTAAAAATACTATTAAAAAGACGCTTGAAGAGAGTGGCGTTGATTATGAATTAACT
GAAGTTATGGGATTACCAAAAGATTTTAAAACGCATCCACATTATAAGCCATCTAAATAT
TTAAAAGCTGTTTTTGTAAATATTAGACATTAA60
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⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: SAUSA300_0981 [new locus tag: SAUSA300_RS05280 ]
- symbol: SAUSA300_0981
- description: hypothetical protein
- length: 390
- theoretical pI: 6.80741
- theoretical MW: 44767.2
- GRAVY: -0.425128
⊟Function[edit source | edit]
- reaction:
- TIGRFAM: Protein synthesistRNA and rRNA base modification16S rRNA (guanine(966)-N(2))-methyltransferase RsmD (TIGR00095; EC 2.1.1.171; HMM-score: 20.5)FkbH domain (TIGR01686; HMM-score: 11.2)
- TheSEED:
- PFAM: NADP_Rossmann (CL0063) Methyltrans_SAM; S-adenosylmethionine-dependent methyltransferase (PF10672; HMM-score: 86.3)Cons_hypoth95; Conserved hypothetical protein 95 (PF03602; HMM-score: 26.9)MTS; Methyltransferase small domain (PF05175; HMM-score: 25)Met_10; Met-10+ like-protein (PF02475; HMM-score: 18.3)N6-adenineMlase; Probable N6-adenine methyltransferase (PF10237; HMM-score: 17.3)PUA (CL0178) YTH; YT521-B-like domain (PF04146; HMM-score: 13)
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors:
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular Possibility: 1
- Signal Peptide Possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- Ymax: 0.116
- Ymax_pos: 11
- Cmax: 0.112
- Cmax_pos: 70
- Smax: 0.181
- Smax_pos: 1
- Smean: 0.124
- D: 0.119
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit source | edit]
⊟Protein sequence[edit source | edit]
- MKIATLNKGKETKYFNGYPLIEEEDIYSQDHLKEGDIFQIVTDKSQYVATAYVGRQHKGLGWVLTYDKAQQINTAFFVKLFNTALAERDYYFNIDGTNAFRLFNAEGDGVGGLTIDNYDGHLLIQWYSKGIYKFKYAILEAVRKVFDYKSIYEKVRFKDSEYSGGFVEGDAPEFPIVIEENFTFYNVDLEDGLMTGIFLDQKEVRKKLRDQYAKERHVLNLFSYTGAFSAIAASEASSTTSVDLANRSRSLTEENFGLNAIDPKSQYIYVMDTFDFYKYAARHGHSYDTIVIDPPSFARNKKRTFSVQKDYDKLINGALNILSSEGTLLLCTNASVYPLKQFKNTIKKTLEESGVDYELTEVMGLPKDFKTHPHYKPSKYLKAVFVNIRH
⊟Experimental data[edit source | edit]
- experimentally validated: no data available
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
⊟Regulation[edit source | edit]
- sigma factor:
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
⊟Protein stability[edit source | edit]
- half-life: no data available
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
⊟Relevant publications[edit source | edit]