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NCBI: 10-JUN-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_1003 [new locus tag: SAUSA300_RS05400 ]
  • pan locus tag?: SAUPAN003327000
  • symbol: SAUSA300_1003
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SAUSA300_1003 [new locus tag: SAUSA300_RS05400 ]
  • symbol: SAUSA300_1003
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1098403..1099422
  • length: 1020
  • essential: unknown other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGACTGGAGAACAATTTACTCAAATTAAACGTCCAGTAAGTAGATTAACTGAAAAAGTT
    CTAGGTTGGTTATGTTGGGTGATGTTATTAGTGCTTACTGTCATTACGATGTTTATAGCA
    CTTGTTTCATTCAGTAATAACACATCGATTGCTAATCTTGAAAATACATTAAACAATAAT
    GCATTTATCCAGCAATTATTAGCTGGAAATGGCTATAATACAACACAATTTGTAATATGG
    TTACAAAATGGTATATGGGCTATTATCGTTTACTTTATTGTTTGTTTGTTGATTTCATTT
    TTAGCTCTCATATCTATGAATATAAGAATCTTGTCAGGTTTCTTATTCTTAATATCAGCA
    ATTGTAACGATTCCTTTAGTTTTACTTATCGTTACTTTAATCATTCCGATATTATTCTTT
    ATTATTGCGATGATGCTATTTATAAGAAAAGATAAAGTTGAAATGGTTGCGCCACAATAT
    TATGAAGAGTATAACGGACCGATTTATGATTATCGTGAACCTGTGTATGAGCGCCCCCAA
    CCGAAAGATGATTATTATGATGTGCCTAAATATGAAAAAGAATTGGATAAATCAAATACT
    GTATATGATCAAGAACAGGAAAGAGATAAATATGATCAATTTCCTAAACGTGCAGTTGAA
    AGTGAATATAATCATGATGAGCGCACTGAGGAAGAACCATCAGTATTATCCAGACAGGCT
    AAATACAAACAAAAAAGTACTGAAGAACTAGGTATTGAAGATGATGGTTATTATGCAGAA
    CCTGAAGTTGATCCAAAAGAATTGAAAGCACAACAAAAGCGAGAAAAAGCTGAAATTAAA
    GCTAAGAAAAAAGAAAAACGTAAAGCTTATAACCAACGAATGAAAGAACGTAGGAAAAAT
    CAACCTAGCGCAGTTAGTCAACGTCGAATGAATTTTGAAGAGCGACGTCAAATTTACAAC
    AATGATATTTCTGAAGAACGCAATTCAAGTGAAGTTAAGGACAAAAAAGAGCAAGAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SAUSA300_1003 [new locus tag: SAUSA300_RS05400 ]
  • symbol: SAUSA300_1003
  • description: hypothetical protein
  • length: 339
  • theoretical pI: 5.68472
  • theoretical MW: 40058.7
  • GRAVY: -0.50413

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:  
    FIG01108899: hypothetical protein 
  • PFAM:
    Tetraspannin (CL0347) DUF4064; Protein of unknown function (DUF4064) (PF13273; HMM-score: 66)
    no clan definedCholine_transpo; Plasma-membrane choline transporter (PF04515; HMM-score: 20.1)
    IncA; IncA protein (PF04156; HMM-score: 16.8)
    DUF975; Protein of unknown function (DUF975) (PF06161; HMM-score: 13.6)
    PHO4; Phosphate transporter family (PF01384; HMM-score: 12.3)
    Peroxisome (CL0484) Pex24p; Integral peroxisomal membrane peroxin (PF06398; HMM-score: 11.7)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 3
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: 0.5
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.328
    • Ymax_pos: 52
    • Cmax: 0.221
    • Cmax_pos: 52
    • Smax: 0.643
    • Smax_pos: 44
    • Smean: 0.259
    • D: 0.301
  • predicted transmembrane helices (TMHMM): 3

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MTGEQFTQIKRPVSRLTEKVLGWLCWVMLLVLTVITMFIALVSFSNNTSIANLENTLNNNAFIQQLLAGNGYNTTQFVIWLQNGIWAIIVYFIVCLLISFLALISMNIRILSGFLFLISAIVTIPLVLLIVTLIIPILFFIIAMMLFIRKDKVEMVAPQYYEEYNGPIYDYREPVYERPQPKDDYYDVPKYEKELDKSNTVYDQEQERDKYDQFPKRAVESEYNHDERTEEEPSVLSRQAKYKQKSTEELGIEDDGYYAEPEVDPKELKAQQKREKAEIKAKKKEKRKAYNQRMKERRKNQPSAVSQRRMNFEERRQIYNNDISEERNSSEVKDKKEQE

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]