NCBI: 10-JUN-2013
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_1851 [new locus tag: SAUSA300_RS10115 ]
- pan locus tag?: SAUPAN004853000
- symbol: SAUSA300_1851
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: SAUSA300_1851 [new locus tag: SAUSA300_RS10115 ]
- symbol: SAUSA300_1851
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 2013664..2014500
- length: 837
- essential: unknown other strains
⊟Accession numbers[edit source | edit]
- Gene ID: 3913676 NCBI
- RefSeq: YP_494503 NCBI
- MicrobesOnline: 1293366 MicrobesOnline
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
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781ATGCTAGATAATATTATTTTATATTTTAAAAACTTACCGCATACTAAAAGGTATGTAACA
GAACGTTTAAAACAAAGTTGGAAAAGTTTTCTAATCGTATTAGCTGCATGTTTAATACTT
ATTATTGCAAGTGAAACGCTATTTTCCTTTAGTCATTTGACCGATGTTAAAGAGGTGAGA
TGGTTATTTAGAATCATTGTATTGATTGTTTTTGCGGTAGTGATGTTCACAATTTATATC
TCTTATCATCATTATATGAATGACTTTTTAGTTACTAAGTTATTTAATATTTCCGCAGCG
ACGCCAGTAGTTATTATGTCTATTTTAAGTTTTATTATGCTAGTCATTTTGACGATGATT
AGTGCATTGGTTAAACCAGTAAACTTCGAAACATCATATATAGCGCTATTCTATTTTATT
GTGATGGCAACTATTTTTGTAGGATTAATATCCGTTACTTTTGGTCTTATTCGACTGTTA
ACTGAAAAAATAAATATCATATTTTATGGGGTTTGTGTATTGTGTTTCTTATTGTTACCA
ATTATTTTCATACCAAATCCAAATCATGTATTTATCAATCACATCCTAATGCTAAATCCA
ATGTATTACATTGTTAATGGTATAGCACAATCTATCATATTTGGTATATCAAGTATGGAA
AACATTCCATATCATTTTTACTTTATTTTATTCTTATGTTTAATAGCTGCAGTAAATTTC
GTATTAGCAAGGTATACGACACACGCAATTTATAATAAAACATCTAAAGTGACACAAACT
GATAATCAACAGGATGTTTCAAATGATAGTACAGACGAGGCGGATACTTCTTCATGA60
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⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: SAUSA300_1851 [new locus tag: SAUSA300_RS10115 ]
- symbol: SAUSA300_1851
- description: hypothetical protein
- length: 278
- theoretical pI: 7.9856
- theoretical MW: 31955
- GRAVY: 0.889928
⊟Function[edit source | edit]
- reaction:
- TIGRFAM: TIGR03943 family protein (TIGR03943; HMM-score: 3.4)
- TheSEED:
- PFAM: no clan definedDUF2615; Protein of unknown function (DUF2615) (PF11027; HMM-score: 8.4)ABC-2 (CL0181) ABC2_membrane; ABC-2 type transporter (PF01061; HMM-score: 7.8)no clan definedDUF4131; Domain of unknown function (DUF4131) (PF13567; HMM-score: 7.4)
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors:
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 6
- LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular Possibility: 0.17
- Signal Peptide Possibility: 0
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- Ymax: 0.126
- Ymax_pos: 34
- Cmax: 0.126
- Cmax_pos: 50
- Smax: 0.229
- Smax_pos: 28
- Smean: 0.116
- D: 0.122
- predicted transmembrane helices (TMHMM): 7
⊟Accession numbers[edit source | edit]
⊟Protein sequence[edit source | edit]
- MLDNIILYFKNLPHTKRYVTERLKQSWKSFLIVLAACLILIIASETLFSFSHLTDVKEVRWLFRIIVLIVFAVVMFTIYISYHHYMNDFLVTKLFNISAATPVVIMSILSFIMLVILTMISALVKPVNFETSYIALFYFIVMATIFVGLISVTFGLIRLLTEKINIIFYGVCVLCFLLLPIIFIPNPNHVFINHILMLNPMYYIVNGIAQSIIFGISSMENIPYHFYFILFLCLIAAVNFVLARYTTHAIYNKTSKVTQTDNQQDVSNDSTDEADTSS
⊟Experimental data[edit source | edit]
- experimentally validated: no data available
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
⊟Regulation[edit source | edit]
- sigma factor:
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
- Aureolib: no data available
⊟Protein stability[edit source | edit]
- half-life: no data available
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
⊟Relevant publications[edit source | edit]