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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_RS01320 [old locus tag: SAUSA300_0247 ]
  • pan locus tag?: SAUPAN001126000
  • symbol: SAUSA300_RS01320
  • pan gene symbol?: tarL'
  • synonym:
  • product: tagB protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SAUSA300_RS01320 [old locus tag: SAUSA300_0247 ]
  • symbol: SAUSA300_RS01320
  • product: tagB protein
  • replicon: chromosome
  • strand: +
  • coordinates: 296425..297966
  • length: 1542
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_007793 (296425..297966) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    ATGAAAATAGACGGTAATACATTTATATGTAGATTCAACGTCGCAATATTAGACGATGGG
    TATTATTTACCAATGGATAAATATTTATTTGTTTATCATGACCAGTTAGAGTATATTGGA
    CAACTTAATCCAAATATTATTGATCAAGCTTATGCGGCATTAAATGAAGAGCAAATTGAA
    GAATACAATGAGCTGACTACACAAAATGGAAAAGTGAACTATTTATTAGCGTATGATGCT
    AAAGTTTTCCGTAAAGGTGGCGTATCACAACATACGGTCTATACCATTACTCCGGAAATA
    GCAAGTGACGTTAACGAATTTGTATTTGATATTGAAATCACCTTACCTCAAGAGAAATCA
    GGGGTCATTGCGACAAGTGCACACTGGCTTCATAAACAAGGTCATAAAGCTTCATTTGAA
    AGTAGAAGTTTCTTATTTAAAGCTATTTTTAATATTACAAAGTTACTACATATTAAAAGA
    AGCAAAACAATATTATTCACATCAGATTCGCGTCCGAATTTATCAGGGAATTTCAAGTAT
    GTATATGATGAGTTACTACGCCAAAAAGTAGATTTTGATTATGATATTAAAACGGTATTT
    AAGGAGAATATTACGGATAGACGCAAATGGAGAGACAAGTTTAGATTGCCATATTTACTT
    GGTAAGGCCGATTATATTTTTGTTGATGATTTCCATCCATTAATTTATACGGTTCGCTTT
    AGACCATCACAAGAAATTATTCAAGTGTGGCATGCTGTTGGTGCCTTTAAAACAGTTGGC
    TTTAGTCGTACAGGTAAAAAAGGTGGTCCGTTTATCGATTCATTAAACCATCGTAGTTAC
    ACGAAAGCATATGTTTCATCAGAAACCGATATTCCATTTTATGCTGAAGCATTTGGAATT
    AGAGAAGAAAATGTTGTACCAACAGGTGTACCACGTACTGATGTACTATTTGATGAAGCT
    TATGCAACACAAATTAAACAAGAGATGGAAGATGAATTGCCAATTATAAAAGGTAAGAAA
    GTTATTCTATTCGCACCGACATTTAGAGGTAATGGTCACGGTACGGCACATTATCCATTT
    TTTAAAATTGATTTTGAACGTTTAGCAAGATACTGCGAGAAGCATAATGCAGTTGTGTTA
    TTCAAAATGCATCCGTTCGTAAAAAATAGACTTAATATTTCACGTGAACATAGACAATAC
    TTTATCGATGTGTCAGATCATCGTGAAGTTAACGATATTCTCTTTGTTACAGACTTGTTG
    ATTAGTGATTATTCATCTTTAATATATGAATATGCAGTATTTAAAAAGCCGATGATTTTC
    TATGCATTTGACTTAGAAGATTACATTACGACGCGTGATTTCTATGAACCATTTGAATCA
    TTTGTTCCAGGTAAAATTGTACAGTCCTTTGATGCATTAATGGATGCTTTGGACAATGAA
    GATTATGAGGTTGAAAAAGTTGTGCCATTCTTAGATAAACATTTTAAATATCAAGATGGT
    CGCTCAAGTGAACGTTTAGTCAAAGATTTGTTTAGACGCTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1542

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SAUSA300_RS01320 [old locus tag: SAUSA300_0247 ]
  • symbol: SAUSA300_RS01320
  • description: tagB protein
  • length: 513
  • theoretical pI: 6.52023
  • theoretical MW: 60183
  • GRAVY: -0.353411

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:
  • PFAM:
    GT-B (CL0113) Glyphos_transf; CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase (PF04464; HMM-score: 341.7)
    Epimerase_2; UDP-N-acetylglucosamine 2-epimerase (PF02350; HMM-score: 18.3)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 1.05
    • Cytoplasmic Membrane Score: 8.78
    • Cellwall Score: 0.08
    • Extracellular Score: 0.09
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.126
    • Ymax_pos: 53
    • Cmax: 0.161
    • Cmax_pos: 53
    • Smax: 0.152
    • Smax_pos: 1
    • Smean: 0.069
    • D: 0.104
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI:
  • RefSeq: WP_011446981 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MKIDGNTFICRFNVAILDDGYYLPMDKYLFVYHDQLEYIGQLNPNIIDQAYAALNEEQIEEYNELTTQNGKVNYLLAYDAKVFRKGGVSQHTVYTITPEIASDVNEFVFDIEITLPQEKSGVIATSAHWLHKQGHKASFESRSFLFKAIFNITKLLHIKRSKTILFTSDSRPNLSGNFKYVYDELLRQKVDFDYDIKTVFKENITDRRKWRDKFRLPYLLGKADYIFVDDFHPLIYTVRFRPSQEIIQVWHAVGAFKTVGFSRTGKKGGPFIDSLNHRSYTKAYVSSETDIPFYAEAFGIREENVVPTGVPRTDVLFDEAYATQIKQEMEDELPIIKGKKVILFAPTFRGNGHGTAHYPFFKIDFERLARYCEKHNAVVLFKMHPFVKNRLNISREHRQYFIDVSDHREVNDILFVTDLLISDYSSLIYEYAVFKKPMIFYAFDLEDYITTRDFYEPFESFVPGKIVQSFDALMDALDNEDYEVEKVVPFLDKHFKYQDGRSSERLVKDLFRR

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SAUSA300_RS01320 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]