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NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_RS05275 [old locus tag: SAUSA300_0980 ]
  • pan locus tag?: SAUPAN003299000
  • symbol: SAUSA300_RS05275
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SAUSA300_RS05275 [old locus tag: SAUSA300_0980 ]
  • symbol: SAUSA300_RS05275
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1074605..1075900
  • length: 1296
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_007793 (1074605..1075900) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    ATGTCTTTTCTTAGGAAACACGCCGAAATTATTTTTAGCTATTTAATCGGTATCGTTTCA
    CTCTTCACTGGTCTCATTATTTTAATTAACTTGCCATTAATTAAACAATTAAATGGTGGT
    AAAAAAGTTGATACACATGTTCATAATGTGTGGGAATTTCTGAATGCATTTTTCAGTGAA
    ATTATTAAAGTAATGAGTCGATTTATAGGTGATTTCCCTATAGTTAGTGCAATTGTGATA
    ATTATATTCGGTATTTTAGTTATGTTGATTGGTCATACATTACTTAGAACTATTAAGTAT
    GACTATGATATTTCTATCTTTTTCTTAGTTATCGGTATCATGTACTTTATTATTACTCTT
    ATATTAATGACTCAAGTTTATGGATTCTTTGCAGTGATTTTCATTATTCCATTTACAATT
    CATATAGGATATATCGTCTATAAAGATGAATTGAATCAGGAAAATGTAAAAAATCATTTC
    ATGTGGATAATTGTGAGTTATGGTATAAGTTACTTAATTACACAAATTGCATTGTATGGC
    AGAATTGATGCTAATGAAATAGAGTCAATTGATATCTTAAGTGTCAATGCTTTCTTTATA
    ATTATGTGGTTACTTGGTCAAATGGCTATTTGGAATTTCTTGTTCTTGCGCCGAGCTTTA
    CCTTTAACAAAGCAAGAATTAGGTGAAGAGGAGCCAGAATTATCAAGAACAAGTAAAGGG
    AATGTCACGAATCAAACTAAAATTCACTTGAAACAACTCCAAGATAAGACTACAGAATAT
    GCACGTAAGACAAGAAGAAGTGTCGATTTAGATAAAATTAGAGCTAAAAGAGATAAATTC
    AAAAAGAAAGTTAATGATATTATCGATATTCAAGAAGACGATATTCCTGATTGGATGAGA
    AAACCGAAATGGGTTAAACCAATGTATGTCGAACTATTTTGTGGTGTCGTCATCTTTTTA
    TTCACATTTTTAGAATTTAATAATCGTAATGCATTATTTGTATCTGGTGATTGGAAATTA
    TCACAGACACAATATGTTATTGAATGGGTTACATTATTAATTCTGTTATTCATTATTATC
    GCATATATCGCTACAACGTTAACTTTCCACTTGAAAGGTAAGTTTTATTATTTACAATTA
    TTTATGGGGAGCATTTTATTCTTTAAATTGTTAACGGAATTTATAAATATAATGATTCAT
    GGACTATTACTTTCAGTGTTCATTACGCCAACATTACTATTAATGTTATTGGCAATCATC
    ATTTCTTATTCGTTACAATTACGAGAGCGACCATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1296

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SAUSA300_RS05275 [old locus tag: SAUSA300_0980 ]
  • symbol: SAUSA300_RS05275
  • description: hypothetical protein
  • length: 431
  • theoretical pI: 9.54975
  • theoretical MW: 50455
  • GRAVY: 0.572158

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:
  • PFAM:
    no clan definedDUF3456; TLR4 regulator and MIR-interacting MSAP (PF11938; HMM-score: 14.2)
    DUF4834; Domain of unknown function (DUF4834) (PF16118; HMM-score: 12.3)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 10
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.172
    • Ymax_pos: 43
    • Cmax: 0.14
    • Cmax_pos: 43
    • Smax: 0.411
    • Smax_pos: 35
    • Smean: 0.136
    • D: 0.158
  • predicted transmembrane helices (TMHMM): 10

Accession numbers[edit source | edit]

  • GI: 445931208 NCBI
  • RefSeq: WP_000009063 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MSFLRKHAEIIFSYLIGIVSLFTGLIILINLPLIKQLNGGKKVDTHVHNVWEFLNAFFSEIIKVMSRFIGDFPIVSAIVIIIFGILVMLIGHTLLRTIKYDYDISIFFLVIGIMYFIITLILMTQVYGFFAVIFIIPFTIHIGYIVYKDELNQENVKNHFMWIIVSYGISYLITQIALYGRIDANEIESIDILSVNAFFIIMWLLGQMAIWNFLFLRRALPLTKQELGEEEPELSRTSKGNVTNQTKIHLKQLQDKTTEYARKTRRSVDLDKIRAKRDKFKKKVNDIIDIQEDDIPDWMRKPKWVKPMYVELFCGVVIFLFTFLEFNNRNALFVSGDWKLSQTQYVIEWVTLLILLFIIIAYIATTLTFHLKGKFYYLQLFMGSILFFKLLTEFINIMIHGLLLSVFITPTLLLMLLAIIISYSLQLRERP

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SAUSA300_RS05275 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]