NCBI: 02-MAR-2017
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS05470 [old locus tag: SAUSA300_1017 ]
- pan locus tag?: SAUPAN003344000
- symbol: SAUSA300_RS05470
- pan gene symbol?: ctaM
- synonym:
- product: membrane protein
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: SAUSA300_RS05470 [old locus tag: SAUSA300_1017 ]
- symbol: SAUSA300_RS05470
- product: membrane protein
- replicon: chromosome
- strand: +
- coordinates: 1114814..1115275
- length: 462
- essential: unknown
⊟Accession numbers[edit source | edit]
- Location: NC_007793 (1114814..1115275) NCBI
- MicrobesOnline:
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
- 1
61
121
181
241
301
361
421ATGGGCGTTCCAATTTTACCAACGATTAGTACGACATGTATTGTCATTAGTGCAATTTTA
ATTGCCATTGGTTGGAGACTTATTTGGAAAAGGGAAATAAATAAACACAAAAATGTTATG
TTAGCTGCAGCTGTTTTTGCTTTAACTTTTTTCTTAATCTATGCAAGTAGAACGATTTTT
ATCGGTAATACAGCATTTGGCGGACCAGCATCAATTAAGAAATATTATACGATTTTCTTA
TTTTTCCACATTAATTTAGCAACAATTGGTGGTATTCTAGGCCTAGTTCAAATTATTACT
GCATTTAAAGATAAATATAATGTACACCGCAAATTCGGGCCATTCGCTTCAGTTATATGG
TTCTGTACTGCAATTACAGGTGTAGCAGTTTACTTATTATTATATGTATTATATCCAGGT
GGAGAAACGACATCACTGATTAAAGCAACATTTGGTCATTAA60
120
180
240
300
360
420
462
⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: SAUSA300_RS05470 [old locus tag: SAUSA300_1017 ]
- symbol: SAUSA300_RS05470
- description: membrane protein
- length: 153
- theoretical pI: 10.3728
- theoretical MW: 16909.2
- GRAVY: 0.870588
⊟Function[edit source | edit]
- reaction:
- TIGRFAM:
- TheSEED:
- PFAM: no clan definedDUF420; Protein of unknown function (DUF420) (PF04238; HMM-score: 126.5)DUF2306; Predicted membrane protein (DUF2306) (PF10067; HMM-score: 34.8)DUF3488; Domain of unknown function (DUF3488) (PF11992; HMM-score: 13.7)DUF4750; Domain of unknown function (DUF4750) (PF15938; HMM-score: 11.7)TMCCDC2; Transmembrane and coiled-coil domain-containing protein 2 (PF15844; HMM-score: 11.5)Tetraspannin (CL0347) Tetraspannin; Tetraspanin family (PF00335; HMM-score: 9.4)no clan definedDHHC; DHHC palmitoyltransferase (PF01529; HMM-score: 9.4)DUF4131; Domain of unknown function (DUF4131) (PF13567; HMM-score: 7)
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors:
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 4
- LocateP:
- SignalP: no predicted signal peptide
- Ymax: 0.176
- Ymax_pos: 11
- Cmax: 0.125
- Cmax_pos: 32
- Smax: 0.376
- Smax_pos: 6
- Smean: 0.317
- D: 0.231
- predicted transmembrane helices (TMHMM): 4
⊟Accession numbers[edit source | edit]
⊟Protein sequence[edit source | edit]
- MGVPILPTISTTCIVISAILIAIGWRLIWKREINKHKNVMLAAAVFALTFFLIYASRTIFIGNTAFGGPASIKKYYTIFLFFHINLATIGGILGLVQIITAFKDKYNVHRKFGPFASVIWFCTAITGVAVYLLLYVLYPGGETTSLIKATFGH
⊟Experimental data[edit source | edit]
- experimentally validated: no data available
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
- SAUSA300_RS05470 no polycistronic organisation predicted
⊟Regulation[edit source | edit]
- sigma factor:
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
- Aureolib: no data available
⊟Protein stability[edit source | edit]
- half-life: no data available
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
⊟Relevant publications[edit source | edit]