NCBI: 02-MAR-2017
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS08555 [old locus tag: SAUSA300_1569 ]
- pan locus tag?: SAUPAN004208000
- symbol: SAUSA300_RS08555
- pan gene symbol?: —
- synonym:
- product: collagenase-like protease
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: SAUSA300_RS08555 [old locus tag: SAUSA300_1569 ]
- symbol: SAUSA300_RS08555
- product: collagenase-like protease
- replicon: chromosome
- strand: -
- coordinates: 1717849..1719117
- length: 1269
- essential: unknown
⊟Accession numbers[edit source | edit]
- Location: NC_007793 (1717849..1719117) NCBI
- MicrobesOnline:
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
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1261ATGAAGACAATAGAAGAGATTAAATCAACTCCTAAAACAGTTATGAAGAAACCAGAATTA
TTAGCACCTGCTGGAAACTTAGAAAAGTTAAAAATAGCAGTACATTATGGCGCTGATGCC
GTATTTTTAGGTGGTCAAGAATATGGATTACGTTCAAATGCTGATAATTTCACGATGGAA
GAAATAGCTGAAGGTGTTGAATTTGCGAACCGTTACGGTGCCAAAATTTATGTTACGACA
AATATTATTGCACATGATGAGAATATTGAAGGTCTAGAATCATATTTGCGTAATTTGGAA
AAGACTGGTGCGACAGGTATCATTGTTGCAGATCCTTTAATTATCGAAACATGTAAAGAA
GTTGCGCCAAAACTTGAAATTCATTTATCTACTCAACAATCACTTTCTAATTACAAAGCT
GTAGAATATTGGAAAGAAGAAGGATTGGATCGTGTTGTATTAGCACGTGAGACCGGCGCG
ATGGAAATGCGTGAAATGAAGGAAAAAGTAGATATTGAAATCGAAGCATTTATTCATGGT
GCTATGTGTATCGCCTATTCAGGTAGATGTACATTAAGTAATCATATGACTGCAAGGGAT
TCCAACAGAGGCGGTTGCTGTCAAAGTTGCCGTTGGGATTATGAATTATTAGAAGTTGAT
GATAATGGTGAACTTGATGTTTTTTATAATCAAGGTGAAGTTACACCGTTTGCGATGAGT
CCTAAAGATTTAAAATTAATCGAATCAATTCCTCAAATGATGGATATTGGTGTGGACTCA
TTAAAAATTGAAGGACGTATGAAGTCAATTCATTATATTGCAACAGTTGTCTCAGTATAT
CGTAAAGTCATTGATGCGTATGCGGCAGATCCTGACAACTTTAAGATTAATCCGGAATGG
TTAATAGAGTTAGATAAATGTGCAAATAGAGACACTGCACCAGCATTCTTTGAGGGAACA
CCTGGTTATGAAGAACAGATGTTTGGTCAACAACAATCTAAAAAATCACCATTTGATTTT
TGTGGTTTGGTATTAGACTATAATGAAGATACAAAAATTGCGACTATTCAACAACGAAAT
AACTTTAAACCAGGTCAAGAAATAGAATTCTTTGGTCCAGAAATTGAAACATTTACACAA
GTAGTAGAAGCAATTTATGATGAAGAAGGTAACAGCTTAGACGCGGCGCGCCATCCATTA
CAAATCGTTCAAATTAAAGTGGATCGCCCGATATATCCAAACAACATGATGAGAAAGGAA
ATTGGCTAA60
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⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: SAUSA300_RS08555 [old locus tag: SAUSA300_1569 ]
- symbol: SAUSA300_RS08555
- description: collagenase-like protease
- length: 422
- theoretical pI: 4.49587
- theoretical MW: 47654.8
- GRAVY: -0.38128
⊟Function[edit source | edit]
- reaction: EC 3.4.-.-? ExPASy
- TIGRFAM:
- TheSEED:
- PFAM: no clan definedPeptidase_U32; Peptidase family U32 (PF01136; HMM-score: 286.7)Peptidase_U32_C; Peptidase family U32 C-terminal domain (PF16325; HMM-score: 88.2)TIM_barrel (CL0036) Radical_SAM; Radical SAM superfamily (PF04055; HMM-score: 15.7)no clan definedPucR; Purine catabolism regulatory protein-like family (PF07905; HMM-score: 12.7)
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors:
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- Ymax: 0.158
- Ymax_pos: 12
- Cmax: 0.131
- Cmax_pos: 41
- Smax: 0.315
- Smax_pos: 7
- Smean: 0.255
- D: 0.196
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit source | edit]
⊟Protein sequence[edit source | edit]
- MKTIEEIKSTPKTVMKKPELLAPAGNLEKLKIAVHYGADAVFLGGQEYGLRSNADNFTMEEIAEGVEFANRYGAKIYVTTNIIAHDENIEGLESYLRNLEKTGATGIIVADPLIIETCKEVAPKLEIHLSTQQSLSNYKAVEYWKEEGLDRVVLARETGAMEMREMKEKVDIEIEAFIHGAMCIAYSGRCTLSNHMTARDSNRGGCCQSCRWDYELLEVDDNGELDVFYNQGEVTPFAMSPKDLKLIESIPQMMDIGVDSLKIEGRMKSIHYIATVVSVYRKVIDAYAADPDNFKINPEWLIELDKCANRDTAPAFFEGTPGYEEQMFGQQQSKKSPFDFCGLVLDYNEDTKIATIQQRNNFKPGQEIEFFGPEIETFTQVVEAIYDEEGNSLDAARHPLQIVQIKVDRPIYPNNMMRKEIG
⊟Experimental data[edit source | edit]
- experimentally validated: no data available
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
- SAUSA300_RS08555 no polycistronic organisation predicted
⊟Regulation[edit source | edit]
- sigma factor:
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
- Aureolib: no data available
⊟Protein stability[edit source | edit]
- half-life: no data available
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
⊟Relevant publications[edit source | edit]