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NCBI: 02-MAR-2017

⊟Summary[edit source | edit]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_RS08555 [old locus tag: SAUSA300_1569 ]
  • pan locus tag?: SAUPAN004208000
  • symbol: SAUSA300_RS08555
  • pan gene symbol?: —
  • synonym:
  • product: collagenase-like protease

⊟Genome View[edit source | edit]

⊟Gene[edit source | edit]

⊟General[edit source | edit]

  • type: CDS
  • locus tag: SAUSA300_RS08555 [old locus tag: SAUSA300_1569 ]
  • symbol: SAUSA300_RS08555
  • product: collagenase-like protease
  • replicon: chromosome
  • strand: -
  • coordinates: 1717849..1719117
  • length: 1269
  • essential: unknown

⊟Accession numbers[edit source | edit]

  • Location: NC_007793 (1717849..1719117) NCBI
  • MicrobesOnline:

⊟Phenotype[edit source | edit]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    ATGAAGACAATAGAAGAGATTAAATCAACTCCTAAAACAGTTATGAAGAAACCAGAATTA
    TTAGCACCTGCTGGAAACTTAGAAAAGTTAAAAATAGCAGTACATTATGGCGCTGATGCC
    GTATTTTTAGGTGGTCAAGAATATGGATTACGTTCAAATGCTGATAATTTCACGATGGAA
    GAAATAGCTGAAGGTGTTGAATTTGCGAACCGTTACGGTGCCAAAATTTATGTTACGACA
    AATATTATTGCACATGATGAGAATATTGAAGGTCTAGAATCATATTTGCGTAATTTGGAA
    AAGACTGGTGCGACAGGTATCATTGTTGCAGATCCTTTAATTATCGAAACATGTAAAGAA
    GTTGCGCCAAAACTTGAAATTCATTTATCTACTCAACAATCACTTTCTAATTACAAAGCT
    GTAGAATATTGGAAAGAAGAAGGATTGGATCGTGTTGTATTAGCACGTGAGACCGGCGCG
    ATGGAAATGCGTGAAATGAAGGAAAAAGTAGATATTGAAATCGAAGCATTTATTCATGGT
    GCTATGTGTATCGCCTATTCAGGTAGATGTACATTAAGTAATCATATGACTGCAAGGGAT
    TCCAACAGAGGCGGTTGCTGTCAAAGTTGCCGTTGGGATTATGAATTATTAGAAGTTGAT
    GATAATGGTGAACTTGATGTTTTTTATAATCAAGGTGAAGTTACACCGTTTGCGATGAGT
    CCTAAAGATTTAAAATTAATCGAATCAATTCCTCAAATGATGGATATTGGTGTGGACTCA
    TTAAAAATTGAAGGACGTATGAAGTCAATTCATTATATTGCAACAGTTGTCTCAGTATAT
    CGTAAAGTCATTGATGCGTATGCGGCAGATCCTGACAACTTTAAGATTAATCCGGAATGG
    TTAATAGAGTTAGATAAATGTGCAAATAGAGACACTGCACCAGCATTCTTTGAGGGAACA
    CCTGGTTATGAAGAACAGATGTTTGGTCAACAACAATCTAAAAAATCACCATTTGATTTT
    TGTGGTTTGGTATTAGACTATAATGAAGATACAAAAATTGCGACTATTCAACAACGAAAT
    AACTTTAAACCAGGTCAAGAAATAGAATTCTTTGGTCCAGAAATTGAAACATTTACACAA
    GTAGTAGAAGCAATTTATGATGAAGAAGGTAACAGCTTAGACGCGGCGCGCCATCCATTA
    CAAATCGTTCAAATTAAAGTGGATCGCCCGATATATCCAAACAACATGATGAGAAAGGAA
    ATTGGCTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1269

⊟Protein[edit source | edit]

⊟General[edit source | edit]

  • locus tag: SAUSA300_RS08555 [old locus tag: SAUSA300_1569 ]
  • symbol: SAUSA300_RS08555
  • description: collagenase-like protease
  • length: 422
  • theoretical pI: 4.49587
  • theoretical MW: 47654.8
  • GRAVY: -0.38128

⊟Function[edit source | edit]

  • reaction:
    EC 3.4.-.-?  ExPASy
  • TIGRFAM:
  • TheSEED:
  • PFAM:
    no clan definedPeptidase_U32; Peptidase family U32 (PF01136; HMM-score: 286.7)
    and 3 more
    Peptidase_U32_C; Peptidase family U32 C-terminal domain (PF16325; HMM-score: 88.2)
    TIM_barrel (CL0036) Radical_SAM; Radical SAM superfamily (PF04055; HMM-score: 15.7)
    no clan definedPucR; Purine catabolism regulatory protein-like family (PF07905; HMM-score: 12.7)

⊟Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

⊟Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.158
    • Ymax_pos: 12
    • Cmax: 0.131
    • Cmax_pos: 41
    • Smax: 0.315
    • Smax_pos: 7
    • Smean: 0.255
    • D: 0.196
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit source | edit]

  • GI: 446771048 NCBI
  • RefSeq: WP_000848304 NCBI
  • UniProt:

⊟Protein sequence[edit source | edit]

  • MKTIEEIKSTPKTVMKKPELLAPAGNLEKLKIAVHYGADAVFLGGQEYGLRSNADNFTMEEIAEGVEFANRYGAKIYVTTNIIAHDENIEGLESYLRNLEKTGATGIIVADPLIIETCKEVAPKLEIHLSTQQSLSNYKAVEYWKEEGLDRVVLARETGAMEMREMKEKVDIEIEAFIHGAMCIAYSGRCTLSNHMTARDSNRGGCCQSCRWDYELLEVDDNGELDVFYNQGEVTPFAMSPKDLKLIESIPQMMDIGVDSLKIEGRMKSIHYIATVVSVYRKVIDAYAADPDNFKINPEWLIELDKCANRDTAPAFFEGTPGYEEQMFGQQQSKKSPFDFCGLVLDYNEDTKIATIQQRNNFKPGQEIEFFGPEIETFTQVVEAIYDEEGNSLDAARHPLQIVQIKVDRPIYPNNMMRKEIG

⊟Experimental data[edit source | edit]

  • experimentally validated: no data available

⊟Expression & Regulation[edit source | edit]

⊟Operon[edit source | edit]

  • SAUSA300_RS08555 no polycistronic organisation predicted

⊟Regulation[edit source | edit]

  • sigma factor:
  • regulator:

⊟Transcription pattern[edit source | edit]

⊟Protein synthesis (provided by Aureolib)[edit source | edit]

⊟Protein stability[edit source | edit]

  • half-life: no data available

⊟Biological Material[edit source | edit]

⊟Mutants[edit source | edit]

⊟Expression vector[edit source | edit]

⊟lacZ fusion[edit source | edit]

⊟GFP fusion[edit source | edit]

⊟two-hybrid system[edit source | edit]

⊟FLAG-tag construct[edit source | edit]

⊟Antibody[edit source | edit]

⊟Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

⊟Literature[edit source | edit]

⊟References[edit source | edit]

⊟Relevant publications[edit source | edit]

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