NCBI: 02-MAR-2017

⊟Summary

• organism: Staphylococcus aureus USA300_FPR3757
• locus tag: SAUSA300_RS08760 [old locus tag: SAUSA300_1608 ]
• pan locus tag^?: SAUPAN004262000
• symbol: SAUSA300_RS08760
• pan gene symbol^?: radC
• synonym:
• product: hypothetical protein

⊟Gene

⊟General

• type: CDS
• locus tag: SAUSA300_RS08760 [old locus tag: SAUSA300_1608 ]
• symbol: SAUSA300_RS08760
• product: hypothetical protein
• replicon: chromosome
• strand: -
• coordinates: 1759529..1760200
• length: 672
• essential: unknown

⊟Accession numbers

• Location: NC_007793 (1759529..1760200) NCBI
• BioCyc:
• MicrobesOnline:

⊟Phenotype

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⊟DNA sequence

• 1
  61
  121
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  481
  541
  601
  661
  
  ATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCG
  AATACAGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGAC
  ATTAGTAATGAACTGCTTAAATCTGCTTCGAATCTGAATGAATTGAAAAAATCTTCAATT
  AACGATTTGATAAAAGTTAAAGGGATTGGATTACAAAAAGCAATTACTTTAAAAGCAGCA
  TTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAA
  CCAAGTGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTT
  GTCATTTTATTGTTAAATTCAAAAAATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGT
  ACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATTGCGGTGAGAGAAAAT
  GCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAA
  GATATCATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTG
  GATCATATTATAATCGGTGATAATAGATTTACCAGTCTTGTAGAAGCGGGTTACTTTGAT
  GAAAATGATTGA
  60
  120
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  420
  480
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  672
  

⊟Protein

⊟General

• locus tag: SAUSA300_RS08760 [old locus tag: SAUSA300_1608 ]
• symbol: SAUSA300_RS08760
• description: hypothetical protein
• length: 223
• theoretical pI: 6.79799
• theoretical MW: 24681.3
• GRAVY: -0.0878924

⊟Function

• TIGRFAM:
  Genetic information processingDNA metabolismDNA replication, recombination, and repairDNA repair protein RadC (TIGR00608; HMM-score: 234.2)
• TheSEED:
• PFAM:
  JAB (CL0366) RadC; RadC-like JAB domain (PF04002; HMM-score: 153.7)
  and 2 more
  HHH (CL0198) HHH_2; Helix-hairpin-helix motif (PF12826; HMM-score: 16.2)
  JAB (CL0366) Prok-JAB; Prokaryotic homologs of the JAB domain (PF14464; HMM-score: 14.4)

⊟Structure, modifications & interactions

• domains:
• modifications:
• cofactors:
• effectors:
• protein partners:

⊟Localization

• PSORTb: unknown (no significant prediction)
  • Cytoplasmic Score: 2.5
  • Cytoplasmic Membrane Score: 2.5
  • Cellwall Score: 2.5
  • Extracellular Score: 2.5
  • Internal Helices: 0
• LocateP:
• SignalP: no predicted signal peptide
  • Ymax: 0.176
  • Ymax_pos: 12
  • Cmax: 0.114
  • Cmax_pos: 36
  • Smax: 0.359
  • Smax_pos: 4
  • Smean: 0.314
  • D: 0.23
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI:
• RefSeq: WP_001820603 NCBI
• UniProt:

⊟Protein sequence

• MVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIKVKGIGLQKAITLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSIAVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

⊟Experimental data

• experimentally validated: no data available

⊟Expression & Regulation

⊟Operon

• SAUSA300_RS08760 no polycistronic organisation predicted

⊟Regulation

• sigma factor:
• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: no data available

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Other Information

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