NCBI: 02-MAR-2017
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS08760 [old locus tag: SAUSA300_1608 ]
- pan locus tag?: SAUPAN004262000
- symbol: SAUSA300_RS08760
- pan gene symbol?: radC
- synonym:
- product: hypothetical protein
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: SAUSA300_RS08760 [old locus tag: SAUSA300_1608 ]
- symbol: SAUSA300_RS08760
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 1759529..1760200
- length: 672
- essential: unknown
⊟Accession numbers[edit source | edit]
- Location: NC_007793 (1759529..1760200) NCBI
- MicrobesOnline:
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
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661ATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCG
AATACAGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGAC
ATTAGTAATGAACTGCTTAAATCTGCTTCGAATCTGAATGAATTGAAAAAATCTTCAATT
AACGATTTGATAAAAGTTAAAGGGATTGGATTACAAAAAGCAATTACTTTAAAAGCAGCA
TTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAA
CCAAGTGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTT
GTCATTTTATTGTTAAATTCAAAAAATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGT
ACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATTGCGGTGAGAGAAAAT
GCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAA
GATATCATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTG
GATCATATTATAATCGGTGATAATAGATTTACCAGTCTTGTAGAAGCGGGTTACTTTGAT
GAAAATGATTGA60
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⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: SAUSA300_RS08760 [old locus tag: SAUSA300_1608 ]
- symbol: SAUSA300_RS08760
- description: hypothetical protein
- length: 223
- theoretical pI: 6.79799
- theoretical MW: 24681.3
- GRAVY: -0.0878924
⊟Function[edit source | edit]
- reaction:
- TIGRFAM: DNA metabolismDNA replication, recombination, and repairDNA repair protein RadC (TIGR00608; HMM-score: 234.2)
- TheSEED:
- PFAM: JAB (CL0366) RadC; RadC-like JAB domain (PF04002; HMM-score: 153.7)HHH (CL0198) HHH_2; Helix-hairpin-helix motif (PF12826; HMM-score: 16.2)JAB (CL0366) Prok-JAB; Prokaryotic homologs of the JAB domain (PF14464; HMM-score: 14.4)
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors:
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- Ymax: 0.176
- Ymax_pos: 12
- Cmax: 0.114
- Cmax_pos: 36
- Smax: 0.359
- Smax_pos: 4
- Smean: 0.314
- D: 0.23
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit source | edit]
- GI:
- RefSeq: WP_001820603 NCBI
- UniProt:
⊟Protein sequence[edit source | edit]
- MVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIKVKGIGLQKAITLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSIAVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND
⊟Experimental data[edit source | edit]
- experimentally validated: no data available
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
- SAUSA300_RS08760 no polycistronic organisation predicted
⊟Regulation[edit source | edit]
- sigma factor:
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
- Aureolib: no data available
⊟Protein stability[edit source | edit]
- half-life: no data available
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
⊟Relevant publications[edit source | edit]