NCBI: 02-MAR-2017
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS10870 [old locus tag: SAUSA300_1979 ]
- pan locus tag?: SAUPAN005205000
- symbol: SAUSA300_RS10870
- pan gene symbol?: ktrB
- synonym:
- product: potassium transporter KtrB
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: SAUSA300_RS10870 [old locus tag: SAUSA300_1979 ]
- symbol: SAUSA300_RS10870
- product: potassium transporter KtrB
- replicon: chromosome
- strand: +
- coordinates: 2134870..2136177
- length: 1308
- essential: unknown
⊟Accession numbers[edit source | edit]
- Location: NC_007793 (2134870..2136177) NCBI
- MicrobesOnline:
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
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1261ATGAACAAAGTCCACAAACCTTTATATTTTTATTTAATGCTTTTCTTCTCTACAACTATC
ATAGGTGCACTTTTATTGTATTTACCTTTTACTGGTAAAAAGCCAATATCTTTTTTAGAT
GCCCTATTTATAGCTTCAAGTGCATTTACAGTTACTGGCTTGTCCCCAGTTGATATAGGA
TCACAGTTTAATATACTTGGTGAGATAGTAATACTATTATTAATTCAAATAGGTGGTCTG
GGTATCGTGACCGTAACCCTATTGACACTAGTATTTTTAAATAGAAAGATATCAATGAAA
AATAGATTCTTGATTATGGTTACATGGAATATTGACGAACCTGGTGGTGTTATTAAGCTA
ATTAAACACTTGGCTATTTATAGTTTAGTCACTGAATTAATTGGTATGATTTGTTTGTGT
TTATCTTTTATACCAAAATTTGGTATAGGCAAAGGTTTATTTTTAAGCTTATTCACATCA
GTATCAGCTTTTAATAATGCTGGATTTGCCCTTTTTAAGAATAACTTAATAGATTATTCT
AGTGATCCAATTGTCATTATTACAATCTCAATACTCATAATATTTGGAGGTATTGGACAT
TTTGTCGTGATAGACTTTATTAATTGTAAAAAATTGAGTAAATTATCTTTACATTCTAAA
TTAGTCTTAACTACAACTAGTATCCTAATAATTATAGGAGCTATTACATTCTTTTTATTA
GAACAGTTTAATACTATGCAACATATGGGACTAGTTGAAAAAATCGGAAATTCTTTTTTC
CAATCAGTAACAACACGAACAGCGGGTTTTAACAGTATAGATATAGCAAGCATTAACAAA
TCTACCGCATTAATGTTAATGCTACTTATGTTTATTGGTGGTGCCCCTCTCAGTGCAGCT
GGAGGAATTAAAATAACTACTTTTGCAGTTGCGTTTATTTTTGTACTAAATTATATACGT
AAAGAAAATAATGTTTCAGTATTCAATAAAGAAATATCTGACAAACATATAAAACTATCT
ATTGTTACCATTAATATCTCATTTCTATTTATCAGCATCATTACTTTTATATTATCGATA
ATTAATCCGAACATATCATTAATCAAGTTATTATTCGAAGTGGTTTCTGCATTCGGAACA
GTAGGGTTAAGTATGAACCTTACCACAGAATATCATGGTATTACTAAAATAATTATTATA
TTCGTTATGCTTTGCGGTAAAGTAGGACTATTAACTTTATTAAGAACATTTATACCACCA
AAAAGTCCTAAAAATTACCGCTACACTAAAGGACAAATTTATCTATAA60
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⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: SAUSA300_RS10870 [old locus tag: SAUSA300_1979 ]
- symbol: SAUSA300_RS10870
- description: potassium transporter KtrB
- length: 435
- theoretical pI: 10.2528
- theoretical MW: 47978.5
- GRAVY: 0.914713
⊟Function[edit source | edit]
- reaction:
- TIGRFAM: Transport and binding proteinsCations and iron carrying compoundspotassium uptake protein, TrkH family (TIGR00933; HMM-score: 330.4)Transport and binding proteinsCations and iron carrying compoundspotassium uptake protein, Trk family (TIGR00934; HMM-score: 95.2)
- TheSEED:
- PFAM: Ion_channel (CL0030) TrkH; Cation transport protein (PF02386; HMM-score: 177.7)
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors:
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 11
- LocateP:
- SignalP: no predicted signal peptide
- Ymax: 0.181
- Ymax_pos: 11
- Cmax: 0.129
- Cmax_pos: 58
- Smax: 0.475
- Smax_pos: 3
- Smean: 0.338
- D: 0.242
- predicted transmembrane helices (TMHMM): 11
⊟Accession numbers[edit source | edit]
⊟Protein sequence[edit source | edit]
- MNKVHKPLYFYLMLFFSTTIIGALLLYLPFTGKKPISFLDALFIASSAFTVTGLSPVDIGSQFNILGEIVILLLIQIGGLGIVTVTLLTLVFLNRKISMKNRFLIMVTWNIDEPGGVIKLIKHLAIYSLVTELIGMICLCLSFIPKFGIGKGLFLSLFTSVSAFNNAGFALFKNNLIDYSSDPIVIITISILIIFGGIGHFVVIDFINCKKLSKLSLHSKLVLTTTSILIIIGAITFFLLEQFNTMQHMGLVEKIGNSFFQSVTTRTAGFNSIDIASINKSTALMLMLLMFIGGAPLSAAGGIKITTFAVAFIFVLNYIRKENNVSVFNKEISDKHIKLSIVTINISFLFISIITFILSIINPNISLIKLLFEVVSAFGTVGLSMNLTTEYHGITKIIIIFVMLCGKVGLLTLLRTFIPPKSPKNYRYTKGQIYL
⊟Experimental data[edit source | edit]
- experimentally validated: no data available
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
- SAUSA300_RS10870 no polycistronic organisation predicted
⊟Regulation[edit source | edit]
- sigma factor:
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
- Aureolib: no data available
⊟Protein stability[edit source | edit]
- half-life: no data available
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
⊟Relevant publications[edit source | edit]