From AureoWiki
Jump to: navigation, search

NCBI: 02-MAR-2017

⊟Summary[edit source | edit]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_RS10870 [old locus tag: SAUSA300_1979 ]
  • pan locus tag?: SAUPAN005205000
  • symbol: SAUSA300_RS10870
  • pan gene symbol?: ktrB
  • synonym:
  • product: potassium transporter KtrB

⊟Genome View[edit source | edit]

⊟Gene[edit source | edit]

⊟General[edit source | edit]

  • type: CDS
  • locus tag: SAUSA300_RS10870 [old locus tag: SAUSA300_1979 ]
  • symbol: SAUSA300_RS10870
  • product: potassium transporter KtrB
  • replicon: chromosome
  • strand: +
  • coordinates: 2134870..2136177
  • length: 1308
  • essential: unknown

⊟Accession numbers[edit source | edit]

  • Location: NC_007793 (2134870..2136177) NCBI
  • MicrobesOnline:

⊟Phenotype[edit source | edit]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    ATGAACAAAGTCCACAAACCTTTATATTTTTATTTAATGCTTTTCTTCTCTACAACTATC
    ATAGGTGCACTTTTATTGTATTTACCTTTTACTGGTAAAAAGCCAATATCTTTTTTAGAT
    GCCCTATTTATAGCTTCAAGTGCATTTACAGTTACTGGCTTGTCCCCAGTTGATATAGGA
    TCACAGTTTAATATACTTGGTGAGATAGTAATACTATTATTAATTCAAATAGGTGGTCTG
    GGTATCGTGACCGTAACCCTATTGACACTAGTATTTTTAAATAGAAAGATATCAATGAAA
    AATAGATTCTTGATTATGGTTACATGGAATATTGACGAACCTGGTGGTGTTATTAAGCTA
    ATTAAACACTTGGCTATTTATAGTTTAGTCACTGAATTAATTGGTATGATTTGTTTGTGT
    TTATCTTTTATACCAAAATTTGGTATAGGCAAAGGTTTATTTTTAAGCTTATTCACATCA
    GTATCAGCTTTTAATAATGCTGGATTTGCCCTTTTTAAGAATAACTTAATAGATTATTCT
    AGTGATCCAATTGTCATTATTACAATCTCAATACTCATAATATTTGGAGGTATTGGACAT
    TTTGTCGTGATAGACTTTATTAATTGTAAAAAATTGAGTAAATTATCTTTACATTCTAAA
    TTAGTCTTAACTACAACTAGTATCCTAATAATTATAGGAGCTATTACATTCTTTTTATTA
    GAACAGTTTAATACTATGCAACATATGGGACTAGTTGAAAAAATCGGAAATTCTTTTTTC
    CAATCAGTAACAACACGAACAGCGGGTTTTAACAGTATAGATATAGCAAGCATTAACAAA
    TCTACCGCATTAATGTTAATGCTACTTATGTTTATTGGTGGTGCCCCTCTCAGTGCAGCT
    GGAGGAATTAAAATAACTACTTTTGCAGTTGCGTTTATTTTTGTACTAAATTATATACGT
    AAAGAAAATAATGTTTCAGTATTCAATAAAGAAATATCTGACAAACATATAAAACTATCT
    ATTGTTACCATTAATATCTCATTTCTATTTATCAGCATCATTACTTTTATATTATCGATA
    ATTAATCCGAACATATCATTAATCAAGTTATTATTCGAAGTGGTTTCTGCATTCGGAACA
    GTAGGGTTAAGTATGAACCTTACCACAGAATATCATGGTATTACTAAAATAATTATTATA
    TTCGTTATGCTTTGCGGTAAAGTAGGACTATTAACTTTATTAAGAACATTTATACCACCA
    AAAAGTCCTAAAAATTACCGCTACACTAAAGGACAAATTTATCTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1308

⊟Protein[edit source | edit]

⊟General[edit source | edit]

  • locus tag: SAUSA300_RS10870 [old locus tag: SAUSA300_1979 ]
  • symbol: SAUSA300_RS10870
  • description: potassium transporter KtrB
  • length: 435
  • theoretical pI: 10.2528
  • theoretical MW: 47978.5
  • GRAVY: 0.914713

⊟Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    MetabolismTransport and binding proteinsCations and iron carrying compoundspotassium uptake protein, TrkH family (TIGR00933; HMM-score: 330.4)
    MetabolismTransport and binding proteinsCations and iron carrying compoundspotassium uptake protein, Trk family (TIGR00934; HMM-score: 95.2)
  • TheSEED:
  • PFAM:
    Ion_channel (CL0030) TrkH; Cation transport protein (PF02386; HMM-score: 177.7)

⊟Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

⊟Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 11
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.181
    • Ymax_pos: 11
    • Cmax: 0.129
    • Cmax_pos: 58
    • Smax: 0.475
    • Smax_pos: 3
    • Smean: 0.338
    • D: 0.242
  • predicted transmembrane helices (TMHMM): 11

⊟Accession numbers[edit source | edit]

  • GI: 446967823 NCBI
  • RefSeq: WP_001045079 NCBI
  • UniProt:

⊟Protein sequence[edit source | edit]

  • MNKVHKPLYFYLMLFFSTTIIGALLLYLPFTGKKPISFLDALFIASSAFTVTGLSPVDIGSQFNILGEIVILLLIQIGGLGIVTVTLLTLVFLNRKISMKNRFLIMVTWNIDEPGGVIKLIKHLAIYSLVTELIGMICLCLSFIPKFGIGKGLFLSLFTSVSAFNNAGFALFKNNLIDYSSDPIVIITISILIIFGGIGHFVVIDFINCKKLSKLSLHSKLVLTTTSILIIIGAITFFLLEQFNTMQHMGLVEKIGNSFFQSVTTRTAGFNSIDIASINKSTALMLMLLMFIGGAPLSAAGGIKITTFAVAFIFVLNYIRKENNVSVFNKEISDKHIKLSIVTINISFLFISIITFILSIINPNISLIKLLFEVVSAFGTVGLSMNLTTEYHGITKIIIIFVMLCGKVGLLTLLRTFIPPKSPKNYRYTKGQIYL

⊟Experimental data[edit source | edit]

  • experimentally validated: no data available

⊟Expression & Regulation[edit source | edit]

⊟Operon[edit source | edit]

  • SAUSA300_RS10870 no polycistronic organisation predicted

⊟Regulation[edit source | edit]

  • sigma factor:
  • regulator:

⊟Transcription pattern[edit source | edit]

⊟Protein synthesis (provided by Aureolib)[edit source | edit]

⊟Protein stability[edit source | edit]

  • half-life: no data available

⊟Biological Material[edit source | edit]

⊟Mutants[edit source | edit]

⊟Expression vector[edit source | edit]

⊟lacZ fusion[edit source | edit]

⊟GFP fusion[edit source | edit]

⊟two-hybrid system[edit source | edit]

⊟FLAG-tag construct[edit source | edit]

⊟Antibody[edit source | edit]

⊟Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

⊟Literature[edit source | edit]

⊟References[edit source | edit]

⊟Relevant publications[edit source | edit]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SAUSA300_RS10870&oldid=100855"